Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E01
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 35 0.013
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 34 0.031
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 29 0.88
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 2.7
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.6
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 8.2
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 8.2
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 8.2
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 35.1 bits (77), Expect = 0.013
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Frame = -2
Query: 438 LCSLHKTGKSF----MACLRIATSSSSHKSNWASIACSDKVGKLLKNFAMN*DAKRFSLS 271
L +L KT +S M+CLRI +SSS W++ +V LKN N A F +S
Sbjct: 254 LLNLVKTSESLSSQQMSCLRICCNSSSF---WSAADSFKEVSSFLKNLLKNVTATPFEVS 310
Query: 270 DPFTAASISKYSFSCCE---------ISSFAAAKIS*FLYNFSILSPAIFLCPLTFVKIS 118
D A I+ + +C + F K + +S+L L L + S
Sbjct: 311 DMNWAYIIASFFRTCLNDFVSVFPEWLKGFVEEKRTIGFIIYSVLDALFDLLSLDYSSPS 370
Query: 117 LTNNNIEI 94
NN + +
Sbjct: 371 FLNNTLSL 378
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 33.9 bits (74), Expect = 0.031
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Frame = +2
Query: 197 LAAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQAIEAQ-FDLCE 373
L K E+S L + KE+ A + +AKF ++ T+S + IE Q ++ E
Sbjct: 94 LTETKQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGE 153
Query: 374 DDD---VAIRKQAIKDLPVLCKEHK----EHTQRIADILAQLLQSEDSTEI-NVVTNSLV 529
DD ++R K L + K + D ++QLLQ+ ST + N+ T S
Sbjct: 154 SDDQLKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTT 213
Query: 530 TILKS 544
+ S
Sbjct: 214 SFFPS 218
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 29.1 bits (62), Expect = 0.88
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +2
Query: 449 QRIADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEI--- 619
+R+ + A LL E+ + ++TNSL LKS K + S ELA ++
Sbjct: 110 KRLGYLAAMLLLDENQEVLTLLTNSLQNDLKSRDKFIVGLALSAFGNVAGPELARDLSND 169
Query: 620 VRERCI---KFLSSKIQQLGREIINKEAE 697
+ E C ++S K +I KE +
Sbjct: 170 IAELCSNHHNYISKKAVLCALRVIQKEPD 198
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +2
Query: 215 EISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFP--TLSEQAIEAQF 361
+I + E+E+LEILA ++ +KE S+ A + P LSE+ +++Q+
Sbjct: 179 DIVRSEEEFLEILAKLEQQEKEASNVSE--ASRIATIPPMILSEEEVKSQY 227
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 233 KEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQAIEAQFD 364
++++ L D+ LAS+ I K +S P L ++ ++ +FD
Sbjct: 394 RQHVNTLKEATKDDELAALASRVIEKIVDSGPILDKEELQTKFD 437
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 592 VLMNL*EDTRQSSFGITFQNCYKR 521
+L+++ E TRQ ++ + FQ YK+
Sbjct: 443 ILLDMKESTRQKNWSLFFQRLYKK 466
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.8 bits (54), Expect = 8.2
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = +2
Query: 362 DLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSLVTILK 541
+LC D+D+ +++Q ++ L + +E D L +++ E +I L +
Sbjct: 518 ELCNDEDLGVQEQMLQVLRNFTCQKEES----VDFLLKMVPMELLAKI-----LLEKLES 568
Query: 542 SDPKGALSGIFSQIH-QNTDGELANEIVRERCIKFLSSKIQQLGREIINKEAEEL 703
+P I+ +H +DGEL + I+R+ +K+ L +EI+ +EA+ L
Sbjct: 569 KNPILIEPSIYILVHIAASDGELRDSILRQ-------TKLLLLVKEIMLQEAQRL 616
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 460 SNSLSVFFVLFA*NW--QIFYGLFTNSNVVILAQVKLGFYCL 341
S S+ FF+L Q+ YGL+TNS +I + + F C+
Sbjct: 347 SRSIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCI 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,477
Number of Sequences: 5004
Number of extensions: 66130
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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