Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D24
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.5  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   8.1  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 723 DAKLFQN*SHVDEVKERLKVGGIIESKVMISNY 625
           D  +F   S   ++K+RLK G +I S +  +NY
Sbjct: 239 DVYMFDEPSSYLDIKQRLKAGRVIRSLLATTNY 271


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 442  SCTDVGIFYIII*LASYEICDLEYLLFTFPYVLTQTNRW 326
            +CT +G F +I  L S  +   E LLF F  +L   N W
Sbjct: 1016 NCTLIGFFPVINRLESEILGIFESLLFHFDSILGYQNYW 1054


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 808 NARASMLG*VNPRVESEIPLLGQEHLRGRCKIVPELISCRRS*RTPESW 662
           N+R  +L  ++ RV++  P+   EH +    I P   S   S   P ++
Sbjct: 51  NSRLQILSEMSKRVQATAPISSLEHFKQLSDISPSFTSSANSINQPYNY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,764
Number of Sequences: 5004
Number of extensions: 65450
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)