Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D24
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583...    52   6e-07
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904...    48   7e-06
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    48   7e-06
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498...    44   2e-04
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    29   4.9  
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736...    28   8.5  

>05_02_0031 -
           5832475-5832696,5832789-5833064,5833303-5833380,
           5833464-5833550,5833639-5833699,5833792-5833880,
           5834001-5834098,5834197-5834296,5834876-5834953
          Length = 362

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 589 SFAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHVNAPGQEEGSPT 765
           S A+ GD  K A+ITY D+ L             ++ S+L   FCIYH+N  G E G+  
Sbjct: 38  SVAIYGDEDKPALITYPDIALNHMSCFQGLLFCPEVASLLLHNFCIYHINPQGHELGAAP 97

Query: 766 LPEDSPI 786
           +P D P+
Sbjct: 98  IPSDVPV 104


>06_03_0479 -
           21289903-21290124,21290207-21290342,21290435-21290490,
           21290734-21290811,21290902-21290988,21291067-21291127,
           21291220-21291308,21291448-21291545,21291655-21291754,
           21293968-21294030
          Length = 329

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 589 SFAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHVNAPGQEEGSPT 765
           S AV GD  K A++TY D+ L             +  S+L   FCIYH++ PG E G+  
Sbjct: 33  SVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEASSLLLHNFCIYHISPPGHELGAAP 92

Query: 766 LPEDSPI 786
           +   SP+
Sbjct: 93  VSPSSPV 99


>02_02_0121 +
           7005356-7005418,7007533-7007632,7007713-7007810,
           7007933-7008021,7008111-7008171,7008253-7008339,
           7008409-7008486,7008583-7008639,7008731-7008786,
           7008877-7009012,7009103-7009324
          Length = 348

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 589 SFAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHVNAPGQEEGSPT 765
           S AV GD  K A++TY D+ L             +  S+L   FCIYH++ PG E G+  
Sbjct: 33  SVAVYGDHDKPALVTYPDIALNHMSCFQGLLFCPEAASLLLHNFCIYHISPPGHELGAAP 92

Query: 766 LPEDSPI 786
           +  ++PI
Sbjct: 93  ISPNAPI 99


>01_01_0653 -
           4981517-4981738,4981841-4981976,4982066-4982121,
           4982228-4982284,4982373-4982450,4982533-4982619,
           4982707-4982767,4982862-4982950,4983048-4983145,
           4983242-4983341,4983983-4984042
          Length = 347

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 589 SFAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHVNAPGQEEGSPT 765
           S +V GD  K A+ITY D+ L             +  S+L   FCIYH+   G E G+  
Sbjct: 32  SVSVFGDEDKPALITYPDVALNYMSCFQGLFFCPEAASLLLHNFCIYHITPQGHELGAAP 91

Query: 766 LPEDSPI 786
           +  D P+
Sbjct: 92  ISSDVPV 98


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +3

Query: 330 RFVCVRT*GKVNNKYSRSQISYEAN*III*KMPTSVHENVALLNMMSSDNYEDDLKSV-- 503
           + VCVRT G+ +  YS+ Q  Y +    +  +P  VH  + +L+  S+ N ED +  V  
Sbjct: 338 KLVCVRTVGRDDFSYSQGQGGYGSVYKGV-FLPGDVHVAIKMLDGNSNCNGEDFISEVAT 396

Query: 504 --QLHFPSERRLQSDGACVEERVR 569
             ++H  +  RL   G C EE  R
Sbjct: 397 IGRIHHINVVRLV--GFCSEEMRR 418


>05_03_0013 +
           7362056-7362471,7363235-7364081,7364272-7364758,
           7365062-7365126,7365275-7365643
          Length = 727

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 671 RRSLTSST*DQFWNNFASTT*MLLAKKRDLRLYPRI 778
           RR   +S   +FWNNF  T   L  +KR   + P I
Sbjct: 682 RRLKNNSNSTEFWNNFQPTERQLRIRKRRYSIVPYI 717


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,215,797
Number of Sequences: 37544
Number of extensions: 424458
Number of successful extensions: 1082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)