Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D23
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           83   3e-16
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     41   0.001
06_03_1120 - 27765613-27765963                                         34   0.17 
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    33   0.23 
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    33   0.30 
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852...    29   3.8  
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   3.8  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 38/57 (66%), Positives = 49/57 (85%), Gaps = 2/57 (3%)
 Frame = +1

Query: 244 IGTFKAFDKHMNLILGDCEEFRKI-KSKNSK-TADREEKRTLGFVLLRGENIVSLTI 408
           +G F AFD+HMNL+LGDCEEFRK+  SK+SK T +REE+RTLG +LLRGE +VS+T+
Sbjct: 28  VGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREERRTLGLLLLRGEEVVSMTV 84



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 162 MTIGKNNKMQQHINYRVRVILQDSRYIYWNF*SF 263
           M+  K +KM Q +NYR+RV +QD R +   F +F
Sbjct: 1   MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAF 34


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +1

Query: 247 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGFVLLRGENIV 396
           G   A+D+H+N+ILGD EE       + +T +   R  KRT+ F+ +RG+ ++
Sbjct: 43  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVI 95


>06_03_1120 - 27765613-27765963
          Length = 116

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 241 FIGTFKAFDKHMNLILGDCEEFR---KIKSKNSKTADREEKRTLGFVLL 378
           F+G F   DK  N++L D  E+R   + +S +S ++   E+R LG +L+
Sbjct: 43  FLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQRGLGLILI 91


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +1

Query: 247 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 393
           G    FD++MNL+L D EE       N K   ++ +++LG +LL+G+NI
Sbjct: 32  GRIIGFDEYMNLVLDDAEEI------NVK---KDTRKSLGRILLKGDNI 71


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +1

Query: 256 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 393
           K FD++MNL+L + EE   IK        ++ +++LG +LL+G+NI
Sbjct: 97  KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133


>07_03_1222 -
           24983294-24983356,24983695-24983858,24985209-24985231,
           24985340-24985374
          Length = 94

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 244 IGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 402
           IGT + FD+ MNL++            N+   +  EK  +G V++RG ++V +
Sbjct: 43  IGTLRGFDQFMNLVV-----------DNTVEVNGNEKNDIGMVVIRGNSVVMI 84


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 588 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 689
           SW+  C   +   P +   +++ND    WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,068
Number of Sequences: 37544
Number of extensions: 311375
Number of successful extensions: 942
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)