Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D22
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161...   157   1e-38
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225...    90   2e-18
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86...    71   9e-13
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    30   2.8  
06_01_0286 - 2094920-2097805                                           29   3.7  

>05_03_0512 +
           14913356-14913769,14915907-14916032,14916129-14916185,
           14916950-14917027,14917681-14917773
          Length = 255

 Score =  157 bits (380), Expect = 1e-38
 Identities = 94/207 (45%), Positives = 115/207 (55%), Gaps = 31/207 (14%)
 Frame = +1

Query: 181 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 354
           +  A A+R   T  LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L  A 
Sbjct: 19  LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78

Query: 355 AKGDIDTIINLAPALKFNGGGHINH------------SIFW--------------HNLSP 456
           AKGD   I++L  A+KFNGGG                S F+                L  
Sbjct: 79  AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138

Query: 457 NGG--KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMKXLQIATCQN 630
            GG   P   L  A+++DFGS++ L  ++S    A+QGSGW WL  +K+ K L + T  N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198

Query: 631 QDPLQAT-TGLVPLFGIDVWEHAYYLQ 708
           QDPL      LVPL GIDVWEHAYYLQ
Sbjct: 199 QDPLVTKGANLVPLLGIDVWEHAYYLQ 225



 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 710 YKNVRADYVKAIFDVANWNDXSQRYE 787
           YKNVR DY+  I+ V NW    + YE
Sbjct: 226 YKNVRPDYLSNIWKVMNWKYAGEVYE 251


>06_01_0314 +
           2255908-2255979,2256354-2256512,2257021-2257209,
           2257390-2257561,2257711-2257784,2257818-2257904,
           2257975-2257998,2258100-2258225
          Length = 300

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
 Frame = +1

Query: 226 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 390
           L +  +ALEP IS+  + LH  KH   Y+++LN   ++LA +   G  ++ +I  A    
Sbjct: 73  LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129

Query: 391 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQ 561
            P  ++N    + NH  FW ++ P GG  P   + + +EKDFGS+ N + +   +++++ 
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189

Query: 562 GSGWGWLGYNKQMKXLQIATCQNQ-------------------DPLQATTGLVPLFGIDV 684
           GSGW WL   ++ +   +   QN                    D +     L PL  +D+
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDL 249

Query: 685 WEHAYYLQXQE 717
           WEHAYYL  ++
Sbjct: 250 WEHAYYLDYKD 260


>06_01_0109 -
           863806-864045,864448-864566,864680-864851,864914-865108,
           865179-865388,865738-865926
          Length = 374

 Score = 71.3 bits (167), Expect = 9e-13
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
 Frame = +1

Query: 226 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 390
           LPY  +ALEP IS+E +  H   H   ++  LN     +E E ++  Q           A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188

Query: 391 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQG 564
           P   F     I NH  +W ++ P GG KP + L K + +DFGS+D +  Q   A+    G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248

Query: 565 SGWGWLGY 588
           SGW WL Y
Sbjct: 249 SGWVWLCY 256


>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 390 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 256
           C VD  V + +    CEF    V + DISR++F   K  +F  ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 214 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 381
           +L  L   +N L  +I   + SLH   H     NNL+    + +Q Q  GD D  I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,450,361
Number of Sequences: 37544
Number of extensions: 492633
Number of successful extensions: 1311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)