Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D20
(953 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 0.40
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 9.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 661 PPXGXXPPAXXPXXXPRPXPPP 726
PP PP P P P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 704 PPAXXPXPXXXGPPXXFXXXKKXPPPPKKKXXKK 805
PP P P PP F + PPPP KK
Sbjct: 5 PPGNPPPPP---PPPGFEPPSQPPPPPPPGYVKK 35
Score = 22.6 bits (46), Expect(3) = 0.40
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 627 PPPPPXPXG 601
PPPPP P G
Sbjct: 9 PPPPPPPPG 17
Score = 22.2 bits (45), Expect(3) = 0.40
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 636 GXXPPPPPXP 607
G PPPPP P
Sbjct: 7 GNPPPPPPPP 16
Score = 21.8 bits (44), Expect(3) = 0.40
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 645 PGGGXXPPPPP 613
P G PPPPP
Sbjct: 5 PPGNPPPPPPP 15
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.73
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 634 PPPRGXXXXPPXGXXPPAXXPXXXPRPXPPPXXXGA 741
PPP PP PP P P PPP A
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = +1
Query: 634 PPPRGXXXXP---PXGXXPPAXXPXXXPRPXPPPXXXGAPP 747
PPP P P PPA P P PPP GA P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 631 SPPPRGXXXXPPXGXXPPAXXPXXXPRPXPPPXXXGAPP 747
SPPP PP P P P P P P G PP
Sbjct: 731 SPPP------PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 637 PPRGXXXXPPXGXXPPAXXPXXXPRPXPPPXXXGAPP 747
P G PP PP P P PPP APP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST--APP 1218
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 634 PPPRGXXXXPPXGXXPPAXXPXXXPRPXPPPXXXGAP 744
P P PP PA P P PPP AP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Frame = +1
Query: 631 SPPPRGXXXXPPXGXXP-PAXXPXXXPRPXPPPXXXGAP 744
+PPP PP P PA P P P P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +3
Query: 534 PPXGXGGFFX-GGXXXXPXKXXGPXXXGGGGXXFXPPPGXXXXPPXXGG 677
PP G GGF GG G GGG F PG P G
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -1
Query: 746 GGAPXXXGG-GXGRGXXKGXXAGGXXPXGGXXXXPRGG 636
GG GG G GRG +G GG G RGG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,341
Number of Sequences: 5004
Number of extensions: 17166
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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