Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D19
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    27   2.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   8.4  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 610 GWRQEVSGSHCAQEGCSDRKSSESPGAVXWETVSGAGHDTCLEY 479
           GWR  +  +HCA    +D  SS  P +  +    G G D   +Y
Sbjct: 31  GWRISMEDAHCALLNFTDSNSSNPPTS-FFGVFDGHGGDRVAKY 73


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 526 VPLPGSHWT-SGLSSPPVRNETLTPPAASQVQP 621
           +P PGS  T S LSSP ++ ++ +PP +    P
Sbjct: 394 IPSPGSSTTCSNLSSPHIKRKSRSPPQSLPSTP 426


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +1

Query: 259 VFVKPRYSTSFKSVFRLECHQVIQHCQSDDR*MLSG*RDEGVQTERLGFSXTIPTRTTSG 438
           V +KP+   + K +  L   + I   + DD+  LS   D G+  E       +  + T G
Sbjct: 570 VILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVG 629

Query: 439 AREQLQIHRPNGTRTPGRCRG 501
           A +   +H     + P  C+G
Sbjct: 630 ASQGGLVHTIWKEKGPEICKG 650


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 466 PNGTRTPGRCRGQPPKRSPXVPLPGSHWTSG--LSSPPVRNETLTPPA 603
           P+  R+  R   +   RS       S  +S   +++PPV N  LTPPA
Sbjct: 197 PSYVRSNSRSSARSTARSAPRSTQRSRSSSANPVTTPPVNNTLLTPPA 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,850
Number of Sequences: 5004
Number of extensions: 60590
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)