Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D19
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1012 + 23550314-23551504 34 0.18
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 33 0.31
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 32 0.54
05_03_0036 + 7605138-7605445,7605718-7605805,7606355-7606408,760... 31 1.3
09_02_0603 - 11150739-11150746,11150791-11151340 30 2.2
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 30 2.2
10_08_0535 + 18613223-18613717,18615858-18616373 30 2.9
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 30 2.9
06_03_0188 - 17691582-17692241 29 6.7
04_01_0200 + 2400929-2402161 29 6.7
12_02_1174 - 26696869-26698191 28 8.8
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 8.8
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 8.8
>08_02_1012 + 23550314-23551504
Length = 396
Score = 33.9 bits (74), Expect = 0.18
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 463 RPNGTRTPGRCRGQPPKRSPXV----PLPGS-HWTSGLSSPPVRNETLTPPAASQVQPT 624
RP +P + + QP RSP P+P + S +S+PP R + PP A++ QPT
Sbjct: 151 RPPPAPSPQKQQPQPQPRSPRPASPPPVPAAPEVASAVSTPPARPKRGRPPRAAKPQPT 209
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 33.1 bits (72), Expect = 0.31
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 418 PTRTTSGAREQLQIHRPNGTR-TPGRCRGQPPKRSPXVPLPGSHWTSGLSSPPVRNETLT 594
PT +TSG+ R N + P RG PP P P PG + S + PP + +
Sbjct: 466 PTSSTSGSTSSWVPPRDNASSWAPPPPRGNPPSWVPLPPPPGGNAPSWVPPPP-QPRGIA 524
Query: 595 PP 600
PP
Sbjct: 525 PP 526
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 32.3 bits (70), Expect = 0.54
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 399 WILRYNPDEDNIWSARAVADTSTQWNTYS 485
WILR + D+D +W+ A+ D + W+ ++
Sbjct: 234 WILRMDDDDDMVWTMDAMVDATELWSLHA 262
>05_03_0036 +
7605138-7605445,7605718-7605805,7606355-7606408,
7606860-7606910,7607625-7607642
Length = 172
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 463 RPNGTRTPGRCRGQPPKRSPXVPLPGSHWTSGLSSPPVRNETLTPP 600
R G G C +PP RS +P+ H L SPP + + PP
Sbjct: 36 RDAGLAPTGHCSAEPPPRSHVLPIRARHAGPSL-SPPAPSLSNVPP 80
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = +1
Query: 448 QLQIHRPNGTRTPGRCRGQ----PPKRSPXVPLPGSHWT----SGLSSPPVRNETLTPPA 603
+L RP +R P +G PP P P PGS + SG+ PP PP
Sbjct: 16 RLSAARPPASRPPRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPPPPPLGSFFVPPP 75
Query: 604 ASQVQP 621
S+V P
Sbjct: 76 QSRVPP 81
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 415 IPTRTTSGAREQLQIHRPNGTRTPG-RCRGQPPKRSPXVPLPGSHWTSGLSSPPVRNE 585
IP+ T +G RE++ I + N + PG R R P R W LS P + +E
Sbjct: 408 IPSATLTGRREKVVIAKENNFKQPGERYRSWDPARQDRFI---KRWIDALSDPRLTHE 462
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 505 PPKRSPXVPLPGSHWTSGLSSPPVRNETLTPPAASQVQPT 624
PP+R +PL G + P + + L PPA Q PT
Sbjct: 38 PPERRGFIPLADRIRDLGAAFPRINLDGLVPPAPPQTHPT 77
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +1
Query: 463 RPNGTRTPGRCRGQPPKRSPXVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 621
RP G R C G P S P + PP R PPAA ++ P
Sbjct: 109 RPGGARLAAACEGPAPPASIVTAPPPP--VAFRRKPPAREAPPPPPAAEKLSP 159
>06_03_0188 - 17691582-17692241
Length = 219
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 493 CRGQPPKRSPXVPLPGSHWT-SGLSSPPVRNETLTPPA 603
C GQ +R PLP S W + L PP T T A
Sbjct: 8 CHGQRQQRYTTYPLPASPWVMTSLEKPPPWTTTTTTMA 45
>04_01_0200 + 2400929-2402161
Length = 410
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 518 DRFGGWPRHLPGVRVPLGRCICNCSRAPDVVLVG 417
D + GW R LPGVR P CN PD L+G
Sbjct: 62 DLYAGWRRALPGVR-PFYAVKCN----PDTALLG 90
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 505 PPKRSPXVPLPGSHWTSGLSSPPVRNETLTPPAASQVQP 621
PP SP P P +W+ +PP + PP + P
Sbjct: 267 PPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPP 305
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 593 HLLPPAKCSPPRSSCGXLSSLPDAVLYTLLXKLER 697
H L + RS C +S+ DA+ Y+L KLER
Sbjct: 708 HYLNDESNNYERSLCARVSNSNDAIAYSLFKKLER 742
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 553 SGLSSPPVRNETLTPPAASQ 612
S SSPP N+T TPP A+Q
Sbjct: 2 SSPSSPPPANQTATPPPANQ 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,877,391
Number of Sequences: 37544
Number of extensions: 476161
Number of successful extensions: 1574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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