Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D17
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.10 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
 Frame = +3

Query: 774 PGPXPXRXX--GSXPXFPPXGTRGAXPXPPPXGIPXXXXXXXP-QXGVXXQTPPXPP 935
           P P P R    GS P  PP G R A P PPP   P       P         PP PP
Sbjct: 338 PPPPPPRSNAAGSIP-LPPQG-RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
 Frame = +3

Query: 747 PXXXPSXRXPGPXPXRXXGSXPXFPP--XGTRGAXPXPPPXGIPXXXXXXXPQXGVXXQT 920
           P   PS R P   P     + P  PP   GT  + P  PP   P       P        
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR--PIAPVSMNPAIN-STSK 289

Query: 921 PPXPP 935
           PP PP
Sbjct: 290 PPLPP 294



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/77 (27%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
 Frame = +3

Query: 711 PRRAP*TXQGVXPXXXPSX--RXPGPXPXRXXGSXPXFPPXGTRGAXPXPPPXGIPXXXX 884
           PR AP T +   P          P P P     S P  PP G       PP    P    
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425

Query: 885 XXXPQXGVXXQTPPXPP 935
              P   +    PP  P
Sbjct: 426 SAPP--SLPPSAPPSLP 440


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = +3

Query: 774 PGPXPXRXXGSXPXFPPXGTRGAXPXPPPXGIPXXXXXXXPQXGVXXQTPPXP 932
           P P P    G  P  PP G  GA P PPP   P              Q  P P
Sbjct: 752 PPPAPIMG-GPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 846 PXPPPXGIPXXXXXXXPQXGVXXQTPPXPP 935
           P PPP  I        P  GV    PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,067
Number of Sequences: 5004
Number of extensions: 22497
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)