Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D16
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical pr... 109 3e-24
Z81118-9|CAM84694.1| 208|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 30 2.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.3
U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.3
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical ... 29 3.3
AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.3
>U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical
protein K11H12.8a protein.
Length = 342
Score = 109 bits (261), Expect = 3e-24
Identities = 51/104 (49%), Positives = 68/104 (65%)
Frame = +2
Query: 440 QVLFXESHLWPQYVKERIKTTYGYIAGSLVLTAGSAVAVFRTPALLNLVARNGWMSIIVT 619
Q + +S +WP YV+ERI TTY Y+AGSL LTA S VA R+ A++ L A G MS+ T
Sbjct: 96 QSILQKSAIWPSYVRERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGT 155
Query: 620 LGLMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICXL 751
+ MI SGM+ R ++Y AK LAW H G++GAV AP+C +
Sbjct: 156 MAAMIASGMLARSIDYESTV-AKHLAWALHCGVLGAVFAPLCFM 198
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +1
Query: 748 LGGPILMRAAWYTAGVVGGLSTIAVCAPS 834
+ GP+L RAAWYTAG+VGGLS A+ APS
Sbjct: 198 MAGPVLTRAAWYTAGIVGGLSATAITAPS 226
>Z81118-9|CAM84694.1| 208|Caenorhabditis elegans Hypothetical
protein T10G3.8 protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 238 NFVPRNYVVRNYAREPRTRVATRSQPTLRERLMAP 342
+ VP+N V +N + +PR RV TR P+ +L P
Sbjct: 119 SLVPKNEVKKNASPQPRVRVITRKSPSPLRKLSTP 153
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 126 KKFKSC*NKRIINYVITNVYRSLGVQCNADSKIASTTKFCTEKLCGQKLCTRT--SNKG- 296
+ K C + IN V N+ ++L N + ++T FC CG CT S KG
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312
Query: 297 RYTLTTHTSGE 329
+H SGE
Sbjct: 1313 MCQCDSHFSGE 1323
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 126 KKFKSC*NKRIINYVITNVYRSLGVQCNADSKIASTTKFCTEKLCGQKLCTRT--SNKG- 296
+ K C + IN V N+ ++L N + ++T FC CG CT S KG
Sbjct: 1254 ESLKGCISSITINEVPINLQQALE-NVNTEQSCSATVNFCAGIDCGNGKCTNNALSPKGY 1312
Query: 297 RYTLTTHTSGE 329
+H SGE
Sbjct: 1313 MCQCDSHFSGE 1323
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 607 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 500
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 607 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 500
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>U21323-2|AAM22051.1| 155|Caenorhabditis elegans Hypothetical
protein C45G9.6b protein.
Length = 155
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 180 VYRSLGVQCNADSKIASTTKFCTEKLCGQKLCTRTSNKG 296
V R G CN+++ S +CT + G K+C TSN G
Sbjct: 58 VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 180 VYRSLGVQCNADSKIASTTKFCTEKLCGQKLCTRTSNKG 296
V R G CN+++ S +CT + G K+C TSN G
Sbjct: 58 VQRDEGGYCNSNTDCRSGL-YCTASVNGVKICLSTSNGG 95
>AC006748-6|AAF60516.1| 582|Caenorhabditis elegans Hypothetical
protein Y39A3B.5a protein.
Length = 582
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 691 ISMDGAHWYYGSCHCSNLLLGGPILMRAAWYTAGVVGGLSTIAVCAP 831
+SM W +G+ C L P+++ A+ YT V+ A+C P
Sbjct: 77 VSMVMNCWMFGNYMCKILAYLQPVVVTASAYTLAVIAFERYFAICKP 123
>AC006748-5|AAX55685.1| 471|Caenorhabditis elegans Hypothetical
protein Y39A3B.5c protein.
Length = 471
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 691 ISMDGAHWYYGSCHCSNLLLGGPILMRAAWYTAGVVGGLSTIAVCAP 831
+SM W +G+ C L P+++ A+ YT V+ A+C P
Sbjct: 77 VSMVMNCWMFGNYMCKILAYLQPVVVTASAYTLAVIAFERYFAICKP 123
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 607 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 500
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 607 GHPSISCYQI*KCGCSENSNCTTS-SQHQRTRDVSIC 500
GHP IS C C+ N+N T S S H + D +C
Sbjct: 1925 GHPQISGESCSPCQCNGNNNLTDSRSCHPNSGDCYLC 1961
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,955,875
Number of Sequences: 27780
Number of extensions: 487355
Number of successful extensions: 1474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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