Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D15
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 822 IQSXRGINHFLHEYAFLLQQTQSNHH 745
           I S   +  F+ +++  LQQ Q  HH
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHH 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 99  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 197
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 748 PWALATLLISSIINTV 701
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 90  FLKMLGAISRVGSGILAVKSVAEKSLSEC 176
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 99  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 197
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 336 RSPRLVLEVAQHLGENTVRTIAMDGTE 416
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,323
Number of Sequences: 438
Number of extensions: 5343
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)