Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D14
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 41 3e-04
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.38
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.50
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.50
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.50
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.66
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.87
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.87
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 1.5
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 1.5
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 1.5
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 1.5
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 1.5
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.7
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 3.5
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 6.1
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 6.1
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 6.1
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 8.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 8.1
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 40.7 bits (91), Expect = 3e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 711 PWLLQERPNWTETYAVWSPLGTYL 782
P + +R NWTETY WSP+GTYL
Sbjct: 185 PEQIVDRENWTETYVQWSPMGTYL 208
Score = 33.9 bits (74), Expect = 0.031
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Frame = +3
Query: 273 GYENVVVVDGCPQVGPERLEK-LQSVINKIFSKFGKIVNE--YYPTTE-NG--LTTGYIF 434
GY+ VVV++G P V + + + + +K+ +K GK+ Y P E NG ++ G +F
Sbjct: 36 GYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 435 LEYSN 449
++ N
Sbjct: 96 ADFEN 100
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 502 KQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPDAYDQFLVWH 663
K HTF+V +K P E+ + FK + L+ +L D DQF+ ++
Sbjct: 118 KNHTFVVRKLNQLEKAFSTPDEFS-FEEREFKEREHLRSWLTDYYGRDQFISYY 170
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 457 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 555
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 457 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 555
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 457 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 555
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 457 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 555
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 695 NALPEPLAVTGETKLDRNLCRLVTFRNILSTFHWRG 802
N PEP + L N RL+ N+++T H++G
Sbjct: 118 NGFPEPSNTDSTSILSFNTIRLIPSTNVINTSHYKG 153
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 357 IFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQKCRRS 470
IFS+FGKI++ + E G + Y F+E+ N + ++
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 339 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQKCRRSRES 479
+S++ F FG+I++ E + Y F+E+ P+ + + E+
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 276 YENVVVVDGC--PQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSN 449
++ +V++ C P+ +L+K ++ +NK +F ++ Y TE + + FLEY +
Sbjct: 784 FQTMVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYASLLHDFLEYQS 843
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 339 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQKCRRSRESDEQL*IR*TTHI 515
++ I ++++ GK V + G+ GY F+E+++P + + + + I T H+
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKP-IPGTNHL 164
Query: 516 F 518
F
Sbjct: 165 F 165
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 324 RLEKLQSVINKIFSKFGKIVNEYYP 398
+ K++ +N F++F K N YYP
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYP 95
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 687 CGRMHYLNPWLLQERPNWTETYAVWS 764
CG +HYL P ++ +P VWS
Sbjct: 164 CGSLHYLAPEIVSHKPYRGAPADVWS 189
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 377 FTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRFLRL 255
F E KY +Y ++ +K + D T V Y VRF RL
Sbjct: 329 FDESEKYLLYGSIVGIKVVSIDNGTVVRIYGKDEAVRFTRL 369
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 384 NEYYPTTENGLTTGYIFLEYSNPQKCRRSRESD 482
++++ T NG + I YSN Q C S + D
Sbjct: 53 SQFFEQTNNGSLSSLIDTSYSNSQICYSSWQGD 85
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 436 WNTVTPRNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQP 591
WN+ +P +A + + N +LD+Q F +L +P PP+ P
Sbjct: 30 WNSSSPSSAPSSSSSQNQVELDEQ--FARSLQNSQSSSYSLPPFDHPPSKNP 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,531
Number of Sequences: 5004
Number of extensions: 72982
Number of successful extensions: 231
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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