Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D14
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 70 2e-12
10_08_0878 - 21239104-21239968,21242008-21242927 31 0.92
02_02_0637 - 12491706-12492575,12492580-12492657 31 1.2
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 30 2.1
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.8
07_03_0973 + 23053441-23054295 29 4.9
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753... 28 8.5
07_01_0688 - 5211484-5211626,5211730-5211826,5211930-5212105,521... 28 8.5
06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194 28 8.5
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 28 8.5
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/70 (45%), Positives = 42/70 (60%)
Frame = +1
Query: 448 TPRNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLM 627
TP+ A A + TN KLDK H F VN+F DF KY +P EW P +P+ +LQ +L
Sbjct: 119 TPQEAELAREKTNGYKLDKSHIFAVNMFDDFDKYMKVPDEWMPAEIKPYTPGENLQKWLA 178
Query: 628 DPDAYDQFLV 657
D A DQF++
Sbjct: 179 DEKARDQFVI 188
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = +3
Query: 273 GYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEY 443
G+ NVVVVD P V PE+ EKL++VI KI+S+ G I + P E T GY F+EY
Sbjct: 58 GFANVVVVDNLPVVPPEKFEKLENVIRKIYSQIGAIKEGGLWMPVNPETKKTYGYCFIEY 117
Query: 444 SNPQKCRRSRE 476
+ PQ+ +RE
Sbjct: 118 NTPQEAELARE 128
Score = 35.5 bits (78), Expect = 0.056
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 711 PWLLQERPNWTETYAVWSPLGTYLA 785
P L+ ++ WT+++ WSPLGTYLA
Sbjct: 206 PELVFQKQYWTDSFIQWSPLGTYLA 230
>10_08_0878 - 21239104-21239968,21242008-21242927
Length = 594
Score = 31.5 bits (68), Expect = 0.92
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 783 LSMFLKVTRRHRFRSSLVSPVTARGSGNAFCHTWRATPVP 664
L++FL TRR+RF+ + SP+T + A + R+ P+P
Sbjct: 236 LAVFLSGTRRYRFKKLVGSPLTQVAAVTAAAWSKRSLPLP 275
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 762 TRRHRFRSSLVSPVTARGSGNA-FCHTWRATP 670
TR RSS SP A + ++ FCH+WR TP
Sbjct: 108 TRSRTPRSSRRSPARATSTTHSPFCHSWRTTP 139
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 303 CPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTE 407
CP +GP ++K+ V+ + SK+G + + T +
Sbjct: 152 CPDIGPAEVQKMADVVKLLESKYGTKITPLFITID 186
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 339 QSVINKIFSKFGKIVNE----YYPTTENGLTTGYIFLEYSNPQKCRRSRE 476
+S I K+FS FGKI+ E + + G GY F++Y+ ++ + ++E
Sbjct: 882 ESDIIKMFSPFGKIIAEDFLWHTRGPKRGEPRGYAFVQYTTKEEAQLAKE 931
>07_03_0973 + 23053441-23054295
Length = 284
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 731 SLL*QPGVQVMHSATPGEPHQSQC 660
S L Q GVQV HS++PG + QC
Sbjct: 6 SCLSQSGVQVAHSSSPGGQNMVQC 29
>08_01_0776 +
7533790-7533984,7534234-7534419,7534542-7534631,
7535284-7535368,7535759-7535925,7536250-7536438,
7537183-7537296,7537391-7537510,7537590-7537712,
7538217-7538315,7538735-7538791,7539272-7539318,
7539391-7539534,7540028-7540205,7540663-7540743,
7540926-7541009,7541416-7541616
Length = 719
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 707 EPLAVTGETKLDRNLCRLVTFRNILSTFHWRGV 805
E L +T ++ + +CR + R +L F W GV
Sbjct: 135 ESLTITLSSEHHKEICRYLYNRQVLGVFDWSGV 167
>07_01_0688 -
5211484-5211626,5211730-5211826,5211930-5212105,
5212240-5212631,5212712-5212960,5213046-5213188,
5213283-5213402,5214491-5214835
Length = 554
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 246 LEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVIN 353
L K KE+D N ++VDG +G +LE++++ I+
Sbjct: 208 LVPKDKEADVINNRLIVDGANGIGGLKLEEIKAKIS 243
>06_03_1176 - 28172230-28172547,28172691-28172849,28172962-28174194
Length = 569
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 376 LPNLLNILFITLCSFSRRSGPTCGH 302
LP+L N+ F+TLCS S R+ G+
Sbjct: 394 LPDLSNLTFLTLCSTSLRAVTVAGN 418
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 354 KIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQKCR 464
++FS FG I++ T NG + GY F+++ + +
Sbjct: 167 EMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAK 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,898,976
Number of Sequences: 37544
Number of extensions: 500550
Number of successful extensions: 1342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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