Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D14
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical... 53 2e-07
AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical... 53 2e-07
U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical pr... 33 0.27
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 30 1.9
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 29 3.3
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 3.3
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 29 3.3
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical p... 29 5.8
Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical p... 29 5.8
>AL032646-11|CAE46682.1| 193|Caenorhabditis elegans Hypothetical
protein Y54E2A.11b protein.
Length = 193
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 231 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 410
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 411 GLTTGYIFLEYSNPQKCR 464
G G + E+++ + +
Sbjct: 89 GGCLGVLLTEWADQRSAQ 106
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +1
Query: 421 LGTFSWNTVTPRNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQ 588
LG R+A AVK+ N DK HTF F D ++ W P Q
Sbjct: 92 LGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQ 147
>AL032646-10|CAA21681.1| 725|Caenorhabditis elegans Hypothetical
protein Y54E2A.11a protein.
Length = 725
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 231 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 410
L+ D+L +KP + +N V + G P VG +RL KLQSV+ K+ + V Y P +
Sbjct: 29 LVPDVLHKKPTIDEFEDNCVFIAGIPVVGADRLGKLQSVLKKVLERLDPAVKLYIPPSPE 88
Query: 411 GLTTGYIFLEYSNPQKCR 464
G G + E+++ + +
Sbjct: 89 GGCLGVLLTEWADQRSAQ 106
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/90 (33%), Positives = 38/90 (42%)
Frame = +1
Query: 421 LGTFSWNTVTPRNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKV 600
LG R+A AVK+ N DK HTF F D ++ W P Q +
Sbjct: 92 LGVLLTEWADQRSAQFAVKSLNGYAFDKNHTFTARSFKDMKQLEAPSDHWTTPEKQAYND 151
Query: 601 QSDLQWYLMDPDAYDQFLVWHWDWCGSPGV 690
DL W+L + DQF + H D G P V
Sbjct: 152 VGDLWWWLQNERCRDQFAISH-DKLGVPTV 180
Score = 34.7 bits (76), Expect = 0.088
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 726 ERPNWTETYAVWSPLGTYLA 785
ER NWTET WSP G+YL+
Sbjct: 201 ERANWTETVFTWSPHGSYLS 220
>U29614-6|AAA68809.2| 378|Caenorhabditis elegans Hypothetical
protein F18E9.3 protein.
Length = 378
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 819 PAHSXTPRQWKVLSMFLKVTRRHRFRSSLVSPVTARGSGNAFCHTWRAT 673
P TPRQW + + ++VTR ++ +P T S N W+ T
Sbjct: 199 PRPLTTPRQWTIRGIRIRVTRPPASTTTTPTPTTTTQSPNTRAQWWKTT 247
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 339 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQK 458
+ + K+F+KFG I + T E G + G+ F+ ++NP++
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVE-GKSKGFGFVAFANPEE 264
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 LEKLQSVINKI-FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQKCRRSRESDEQL 491
L+++++V++K+ + F K NE +E + +GYI +Y + C ESD ++
Sbjct: 907 LKEVENVLDKLDVNSFCK-KNEKAGFSEKAIPSGYIIPDYESSIHCGMEEESDSEI 961
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 LEKLQSVINKI-FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQKCRRSRESDEQL 491
L+++++V++K+ + F K NE +E + +GYI +Y + C ESD ++
Sbjct: 907 LKEVENVLDKLDVNSFCK-KNEKAGFSEKAIPSGYIIPDYESSIHCGMEEESDSEI 961
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 312 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSN 449
VG E +S + + F +GKI E G GY F+EYS+
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSD 153
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 LEKLQSVINKI-FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQKCRRSRESDEQL 491
L+++++V++K+ + F K NE +E + +GYI +Y + C ESD ++
Sbjct: 907 LKEVENVLDKLDVNSFCK-KNEKAGFSEKAIPSGYIIPDYESSIHCGMEEESDSEI 961
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
protein R08E3.1b protein.
Length = 1465
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 413 SILGRGV-VFVDNFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 264
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
protein R08E3.1a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 413 SILGRGV-VFVDNFTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRF 264
S++G G+ + ++ +F Y Y + ++L + TP +NVF T +F
Sbjct: 725 SLVGNGIPIAINGAKDFENYLTYYVVPLFQSLQYQVNTPQRVFNVFQTGQF 775
>Z81557-14|CAN99712.1| 321|Caenorhabditis elegans Hypothetical
protein F59A1.11b protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 321 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQK 458
+RL +QSVIN I S F IVNE + + G+ F +S+ ++
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVER 112
>Z81557-13|CAB04530.2| 303|Caenorhabditis elegans Hypothetical
protein F59A1.11a protein.
Length = 303
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 321 ERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQK 458
+RL +QSVIN I S F IVNE + + G+ F +S+ ++
Sbjct: 67 QRLIIVQSVINIIASVFELIVNEIQTVNLDYVKIGHPFWHFSHVER 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,280,761
Number of Sequences: 27780
Number of extensions: 423222
Number of successful extensions: 1183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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