Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D13
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   127   1e-29
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   127   1e-29

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  127 bits (306), Expect = 1e-29
 Identities = 65/136 (47%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
 Frame = -2

Query: 564 MGXIMXPGKXVLVLSGRYPGCKAXVXKNYDEGTSDKPXGXAFVAGXDRYPRKXHKXMGKN 385
           MG IM PGK VLVL G+Y G KA V K  DEG SD+    A +AG DRYP K  K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 384 XIXKXSXIXPFVKVVXYNHLXPTRXTVXFSFEK--FXXKXLKDPAKXKXXXXXXXVRFEX 211
            I K + + PF+KVV Y HL PTR +V  +F+K     + LK P+K +        +FE 
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120

Query: 210 XYXSGXXXWFFXKXRF 163
            Y +G   WFF K RF
Sbjct: 121 RYKTGKNKWFFTKLRF 136


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  127 bits (306), Expect = 1e-29
 Identities = 65/136 (47%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
 Frame = -2

Query: 564 MGXIMXPGKXVLVLSGRYPGCKAXVXKNYDEGTSDKPXGXAFVAGXDRYPRKXHKXMGKN 385
           MG IM PGK VLVL G+Y G KA V K  DEG SD+    A +AG DRYP K  K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 384 XIXKXSXIXPFVKVVXYNHLXPTRXTVXFSFEK--FXXKXLKDPAKXKXXXXXXXVRFEX 211
            I K + + PF+KVV Y HL PTR +V  +F+K     + LK P+K +        +FE 
Sbjct: 61  KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120

Query: 210 XYXSGXXXWFFXKXRF 163
            Y +G   WFF K RF
Sbjct: 121 RYKTGKNKWFFTKLRF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,375
Number of Sequences: 27780
Number of extensions: 129868
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)