Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    28   1.6  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    28   2.1  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    26   6.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   8.3  

>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 666 QDLLPEDLCLPENLYHYITSIGNTTTVNGEEIKFIYQT 779
           Q+LLP D+  P  L  + T+ GN   +  +  K +YQ+
Sbjct: 136 QELLPSDVATPAFLEAWTTAYGNLAKILIDSEKKVYQS 173


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = -3

Query: 283 EVSVLFVQSHELGSSRHGE-LVSAGTRRHGDRSCCLASHHQRDCHAVVVDLFQSLGPGYY 107
           E +VL   +  L S R      ++G   HG   C LA  +     A+ VD     GP Y 
Sbjct: 13  EHNVLKFGTFTLKSGRKSPYFFNSGNFTHGADLCALAEAYAETIIAMNVDFDVIFGPAYK 72

Query: 106 YLPSWLQLQLVCLYTTLKTTKS*GIPYS 23
            + S   +  V LY   KT KS G  Y+
Sbjct: 73  GI-SLAAITAVKLYE--KTGKSYGFAYN 97


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 187 RNDRRAYEFQQRQ----ALRDDWNQVRDFEQREQKPRGPTQRSTNWRKQ 321
           R+ RR  + Q+R       RD + + R+   RE+ PR P +   NW+ +
Sbjct: 44  RSSRRYEDSQRRDYSPARRRDRYERHRE-SVREESPRRPVEHERNWQPE 91


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 672 GPGISLNPSFSHHYSKVKSMMYALRTVHIECWN--ILKGIRLSNR 544
           G G +L PS+ H Y  +  ++YA R      WN  I+ G+   N+
Sbjct: 113 GDGYALQPSYIHEY--LSKVLYARRNKLDPYWNQLIVAGVDGENK 155


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 714  YITSIGNTTTVNGEEIKFIY 773
            Y+ ++ +T+T+NG + KFIY
Sbjct: 1127 YMLTVASTSTMNGLQPKFIY 1146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,416
Number of Sequences: 5004
Number of extensions: 68768
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)