Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D10
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -2

Query: 592 LW-SMYHFTEAMM----LATPAARPNTLSKLGASTSMYPLSATNDELAVPLIEFRDSVVL 428
           +W S YHFT  +     ++    +   +  L      Y LSA      VP  EFR  +  
Sbjct: 310 VWISQYHFTSGLSGLTYISLSIGQVFAVFVLLPLNQKYWLSAVQKNNGVPEPEFRLPMAF 369

Query: 427 LGCF 416
           LGCF
Sbjct: 370 LGCF 373


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 556 LATPAARPNTLSKLGASTSMYPLSATND 473
           LA P  R NTL +  A +S    S TND
Sbjct: 449 LAAPIGRKNTLRRTPAKSSEEAKSTTND 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,959
Number of Sequences: 5004
Number of extensions: 60666
Number of successful extensions: 194
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)