Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D10
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 31 0.93
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 30 2.8
02_05_0460 - 29224525-29224620,29225525-29226625 30 2.8
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506... 30 2.8
05_04_0437 + 21234261-21234592,21234929-21234997,21235506-212356... 29 3.8
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 5.0
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 29 5.0
09_06_0264 - 21929086-21931368 28 8.7
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 31.5 bits (68), Expect = 0.93
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 688 PSDVEANHTATITNDAKDTTVDITEAMNSQVMLWSMYHFT-EAMMLATPAARPNTLS--K 518
PSD+ + +T +D +DT +T + V +W M H+T + + + P+TL
Sbjct: 3466 PSDLILSVASTTNSDWQDTNWYVTGHQSGAVKVWKMVHYTSDEAANSKSKSPPSTLGGMS 3525
Query: 517 LGASTSMYPL 488
L T Y L
Sbjct: 3526 LNGQTQEYRL 3535
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 508 STSMYPLSATNDELAVPLIEFRDSVVLLGCFPSSGLTRARHASRNEVAES 359
S ++P + E A+P IE +D +++L C+ +GL+R R E+
Sbjct: 480 SNRLFPEATVCFEHAIPKIEEQDPLLVLACY-GAGLSRMRQGDSKMAIEN 528
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 485 GQWVHAGAGAELAQRVRPGGGRRQHHGFREVVHRPQHHLAIHSLGYVH-CSVLGIVCNGS 661
G ++HA +RV GG QHH R H P + + + H S L +V G
Sbjct: 88 GSYLHAAHHHGQGRRVEAPGGESQHHLQRH--HEPARNGVLGGVAGAHAASTLALVGGGG 145
Query: 662 G 664
G
Sbjct: 146 G 146
>02_02_0724 +
13349419-13349641,13349880-13349974,13350366-13350653,
13352838-13352963,13353045-13353204,13354142-13354190,
13354502-13354772,13356071-13356196,13357076-13357231,
13357815-13358058,13358181-13358627,13359348-13359478
Length = 771
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 423 PNNTTESLNSINGTANSSFVADNGYMLVLAPSLL 524
PN T L+ ++G + SF+ D+ V +P LL
Sbjct: 681 PNTVTSMLDPVSGLGHQSFITDDALDQVFSPPLL 714
>05_04_0437 +
21234261-21234592,21234929-21234997,21235506-21235629,
21235740-21235745
Length = 176
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +2
Query: 302 VGAALLRLHGVGAGLGPHRALRHLVPAG-----VSGPGQPGRG 415
+ A LR+H + GLG HRA V AG G G+ G G
Sbjct: 24 IACAGLRMHNLCCGLGSHRAFAPFVAAGGGRCCKGGAGEEGGG 66
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 29.1 bits (62), Expect = 5.0
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Frame = +3
Query: 318 SASTVSGLAWVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGTANSSFVADNGY 497
S ST S L V AL AT A + P T +L ++ G VAD
Sbjct: 422 SESTESVL--VASALIATLTFAAAFTMPGSYRTTGPKEGTPALGALYGF-KVFLVAD--- 475
Query: 498 MLVLAPSLLSVFGLA--AGVASIMASVKWYIDHNITWLFIASVMSTVVSLASFVMVAVWF 671
+L S+ + F LA ++ V+ WLF ++ S +V+ A V V +W
Sbjct: 476 ILAFFCSVAATFSLAEYGNRGTVDPLVRCRYSQRAVWLFHVALRSIIVAFAFGVSVVMWN 535
Query: 672 ASTS 683
S S
Sbjct: 536 ISLS 539
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 345 WVHIALSATSFLLACLALVNPDEGKQPNNTTESLNSINGTANSSFVADNGYMLVLAPSLL 524
+ HI AT FLL + L+ P G +E ++S A S + A +L L+ +LL
Sbjct: 263 FAHIGGFATGFLLGFVLLIQPQFG-----WSEQVSS----AKSKYNAFQIILLTLSVALL 313
Query: 525 SVFGLAAGVASIMASV 572
+ G AAG+ S+ V
Sbjct: 314 -IAGFAAGLVSVFKGV 328
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 220 QGRTQFTKWKTCI-QLKSKQSQIRVTC--IRRSGATPPP 327
QGR + +KW+ C +L+ + I C +++ TPPP
Sbjct: 186 QGRKEVSKWRYCFTELEKDKRDILDRCCQLKKEKETPPP 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,963,697
Number of Sequences: 37544
Number of extensions: 468072
Number of successful extensions: 1620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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