Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D10
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    30   1.9  
AL032623-10|CAA21506.2|  300|Caenorhabditis elegans Hypothetical...    30   1.9  
AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm rece...    29   5.8  

>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
            H08M01.2b protein.
          Length = 1341

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 622  ITEAMNSQVMLWSMYHFTEAMMLATPAARPNTLSKLGASTSMYPLSATNDELAVPLIEFR 443
            I    N +V+ + + H T+           N LSK+   T   P+ A+ +EL+  +I F+
Sbjct: 1264 ILPVSNQKVLQYLVTHLTKVSCSPKTVMNSNNLSKVWTPTLFRPVFASYEELSSGIIAFQ 1323

Query: 442  DSVVLL 425
             ++ +L
Sbjct: 1324 LALEML 1329


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 561 MASVKWYIDHNITWLFIASVMSTVVSLASFVMV 659
           M+SV W +DHN  W    S +   VSL+ F+++
Sbjct: 135 MSSVIWPVDHNKVWSKNLSFIVAFVSLSPFLII 167


>AL032623-10|CAA21506.2|  300|Caenorhabditis elegans Hypothetical
           protein Y43F8B.10 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 181 QCIISQCRS-VLQCQGRTQF--TKWKTCIQLKSKQSQIRVTCIRRSGATPPPRC 333
           QC   + RS  LQ     QF  T++ TC  +  K S+IR  C+++  AT P  C
Sbjct: 118 QCSQPELRSDFLQKCSIFQFFHTEFATCRDVLQKSSKIRENCVKKLFATGPISC 171



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 181 QCIISQCRS-VLQCQGRTQF--TKWKTCIQLKSKQSQIRVTCIRRSGATPPPRC 333
           QC   + RS  LQ     QF  T++ TC  +  K S+IR  C+++  AT P  C
Sbjct: 200 QCSQPELRSDFLQKCSIFQFFHTEFATCRDVLQKSSKIRENCVKKLFATGPISC 253


>AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 40 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 309 RRYSASTVSGLAWVHIALSATSFLLACLALVNPD 410
           R+ + +  SG+  V +AL+A  F+   LALV+PD
Sbjct: 90  RQAALAIYSGIYMVILALAAAQFVYRYLALVHPD 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,413
Number of Sequences: 27780
Number of extensions: 368039
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)