Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D10
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.7  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   8.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   8.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   8.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 546 GVASIMASVKWYIDHNITWLFIASV 620
           G  +++  +    D+N TW++IA V
Sbjct: 181 GKRNVVTPIVQSFDYNNTWVYIADV 205


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 530 VRPGGGRRQHHGF 568
           +RPG   RQH GF
Sbjct: 80  IRPGQPSRQHAGF 92


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 461 HSQLVVRRGQWVHAGAGAELAQRVRPGGGRRQHHGFREVVHRPQH 595
           +S  V   G  + + + +      R G GRR  + F+   + P+H
Sbjct: 25  NSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEH 69


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 461 HSQLVVRRGQWVHAGAGAELAQRVRPGGGRRQHHGFREVVHRPQH 595
           +S  V   G  + + + +      R G GRR  + F+   + P+H
Sbjct: 26  NSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEH 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,801
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)