Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D09
(901 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 103 5e-21
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 93 9e-18
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 76 1e-12
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 51 3e-05
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 43 0.009
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 39 0.20
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 37 0.81
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 35 2.5
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 33 9.9
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 103 bits (248), Expect = 5e-21
Identities = 59/104 (56%), Positives = 65/104 (62%)
Frame = +1
Query: 409 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPXNQGITQEXTXXQKASKRPGTVK 588
+C G +PLPRSLTR ARSFGCGERY+LT G E T + +
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDTRKTLSKEE----I 77
Query: 589 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKPP 720
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFP P
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAP 121
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 93.1 bits (221), Expect = 9e-18
Identities = 46/70 (65%), Positives = 48/70 (68%)
Frame = +1
Query: 565 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKPPXALSCSDP 744
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFP + P P
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 745 AAXXXTCPPF 774
TCPPF
Sbjct: 62 CRLPDTCPPF 71
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 76.2 bits (179), Expect = 1e-12
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +1
Query: 583 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPWKPP 720
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFP P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAP 89
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 51.2 bits (117), Expect = 3e-05
Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 373 CINESANXRGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPXNQGITQ 540
CI + A R AV VL ALPL RS TRC RS GCG + R YG P QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 43.2 bits (97), Expect = 0.009
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 472 CGERYQLTQRR*YG--YPXNQGITQEXTXXQKASKRPGTVKRPRCWRFSIGSAPLTSITK 645
C R Q R G +P N I + + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 646 IDAQVRGGETRQDYKDTRRFPWKPP 720
I Q + +T+ +YK T FP + P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSP 106
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 38.7 bits (86), Expect = 0.20
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +1
Query: 658 VRGGETRQDYKDTRRFPWKPPXALSCSDPAAXXXTCPPF 774
VR GETRQD K P ALSCS+PA PPF
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPF 61
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 36.7 bits (81), Expect = 0.81
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 176 DPXMIXYIDEFGQTTTKM 229
DP MI YIDEFGQTTT+M
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 35.1 bits (77), Expect = 2.5
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 492 HSKAVIRLSXXSGDNAGXN 548
HSKAVIRLS SGDNAG N
Sbjct: 40 HSKAVIRLSTESGDNAGKN 58
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 33.1 bits (72), Expect = 9.9
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -3
Query: 443 ERGSGRAPXTQTAXPRXLADSLMQ 372
+R + AP TQTA PR LADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,195,192
Number of Sequences: 1657284
Number of extensions: 8842876
Number of successful extensions: 16971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16959
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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