Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D09
         (901 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X95453-2|CAA64723.1|  980|Drosophila melanogaster homologous to ...    31   2.2  
AE014297-1114|AAO41538.2|  981|Drosophila melanogaster CG3985-PF...    31   2.8  
AE014297-1112|AAF54506.3| 1041|Drosophila melanogaster CG3985-PD...    31   2.8  

>X95453-2|CAA64723.1|  980|Drosophila melanogaster homologous to
           synapsin I protein.
          Length = 980

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = -2

Query: 777 GERRTXXXXSGRVGTGERXGGLPGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPA 598
           G+        GR  +    G  PG  P      SGF++S L   F  A +G G     P 
Sbjct: 535 GDMEIANKKRGRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKQFSFAGKGEGVISTQPT 594

Query: 597 TRP 589
            RP
Sbjct: 595 QRP 597


>AE014297-1114|AAO41538.2|  981|Drosophila melanogaster CG3985-PF,
           isoform F protein.
          Length = 981

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -2

Query: 747 GRVGTGERXGGLPGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRP 589
           GR  +    G  PG  P      SGF++S L   F  A +G G     P  RP
Sbjct: 546 GRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKQFSFAGKGEGVISTQPTQRP 598


>AE014297-1112|AAF54506.3| 1041|Drosophila melanogaster CG3985-PD,
           isoform D protein.
          Length = 1041

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -2

Query: 747 GRVGTGERXGGLPGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRP 589
           GR  +    G  PG  P      SGF++S L   F  A +G G     P  RP
Sbjct: 606 GRTASETSSGSGPGSVPSSAGPGSGFSSSFLGKQFSFAGKGEGVISTQPTQRP 658


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,408,338
Number of Sequences: 53049
Number of extensions: 423547
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)