Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D08
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20998-1|AAA70170.1|   86|Homo sapiens signal recognition partic...    84   6e-16
BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition part...    84   6e-16
BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition part...    84   6e-16
BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition part...    84   6e-16
BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition part...    84   6e-16
EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition part...    54   9e-07
BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.         54   9e-07
BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.         54   9e-07
BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.         52   3e-06
BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.         52   3e-06
BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal recog...    42   0.002

>U20998-1|AAA70170.1|   86|Homo sapiens signal recognition particle
           subunit 9 protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 561
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 562 SNLLRHMASND 594
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC066957-1|AAH66957.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 561
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 562 SNLLRHMASND 594
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC022415-1|AAH22415.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 561
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 562 SNLLRHMASND 594
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC015094-1|AAH15094.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 561
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 562 SNLLRHMASND 594
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>BC008443-1|AAH08443.1|   86|Homo sapiens signal recognition
           particle 9kDa protein.
          Length = 86

 Score = 84.2 bits (199), Expect = 6e-16
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVRKIDKFM 561
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  CL YKT+  QDV+KI+KF 
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFH 66

Query: 562 SNLLRHMASND 594
           S L+R M + +
Sbjct: 67  SQLMRLMVAKE 77


>EF488978-1|ABP02070.1|   82|Homo sapiens signal recognition
           particle 9 kDa isoform protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 531
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC067845-1|AAH67845.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 531
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC021995-1|AAH21995.1|   82|Homo sapiens SRP9 protein protein.
          Length = 82

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN--KKCLQYKTEVQ 531
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+  ++CL     +Q
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQ 58


>BC106005-1|AAI06006.1|   52|Homo sapiens SRP9 protein protein.
          Length = 52

 Score = 52.0 bits (119), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 498
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC064351-1|AAH64351.1|   49|Homo sapiens SRP9 protein protein.
          Length = 49

 Score = 52.0 bits (119), Expect = 3e-06
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +1

Query: 382 WEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDN 498
           WEEF +AAE LYL DP+  R  +KY HS G   VK+TD+
Sbjct: 7   WEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDD 45


>BC017414-1|AAH17414.1|   45|Homo sapiens Similar to signal
           recognition particle 9kD protein.
          Length = 45

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 487 ITDNKKCLQYKTEVQQDVRKIDKFMSNLLRHMASND 594
           +TD+  CL YKT+  QDV+KI+KF S L+R M + +
Sbjct: 1   VTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKE 36


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,183,996
Number of Sequences: 237096
Number of extensions: 1519486
Number of successful extensions: 1719
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)