Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D06
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 199 PPXXPXPPXPXXXGXPPPKKKKXXXXXGXXXKKKKKKK 312
           PP  P PP P     PPP         G   K  K KK
Sbjct: 7   PPPPPPPPPPPAASAPPPSSNARNALLGDIHKGLKLKK 44


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 199 PPXXPXPPXPXXXGXPPPKKKKXXXXXGXXXKKKKKKK 312
           PP  P PP P     PPP         G   K  K KK
Sbjct: 7   PPPPPPPPPPPAASAPPPSSNARNALLGDIHKGLKLKK 44


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = -3

Query: 872 GXGPXPPXGKGXXVSFXPQXGXKGXQXGVFXGGKGGXFXXXWGXXP 735
           G GP PP G G   S+ P  G  G       GG G       G  P
Sbjct: 408 GYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.148    0.496 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,632,085
Number of Sequences: 27780
Number of extensions: 100671
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)