Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D03
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    29   0.64 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    28   1.5  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 354 DIIKEVCDLILSVVVISDHS*FQRLFTNNQNNFKKR 247
           D++ +V DL LSV +++D       + ++  NFKKR
Sbjct: 410 DVLPDVYDLFLSVNILNDMKIKDEAWQDDTTNFKKR 445


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 785 VTVIYVFW*HNMVSXYITQFFLFAIFEYLHLIHTFLTIHANP 660
           +T I +FW  NM+S  IT  FL   F +++L    L I + P
Sbjct: 429 ITQISLFWDINMLSSMITMTFLLT-FGFINLSCFLLRISSTP 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,134
Number of Sequences: 5004
Number of extensions: 60195
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)