Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_D03
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48009-3|CAA88078.1|  331|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 564 F*FINVILTTLNLIYCLVLIHKNFRYSYSQRFRIGMYCKK 683
           F  ++ +LT  NLI  + +   N R+ +  RF++G   +K
Sbjct: 189 FSILSTVLTLFNLIVSIFIQRYNKRFEFETRFKVGARFQK 228


>Z48009-3|CAA88078.1|  331|Caenorhabditis elegans Hypothetical
           protein AH6.4 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 564 F*FINVILTTLNLIYCLVLIHKNFRYSYSQRFRIGMYCKK 683
           F FI +ILT +NLI    ++  N R  YS R+++    KK
Sbjct: 189 FLFIALILTFVNLISSAAVMFYNKRLEYSIRYKVRERFKK 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,530,402
Number of Sequences: 27780
Number of extensions: 321790
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)