Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D02
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 31 1.7
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 2.2
07_03_1160 - 24430240-24431268 30 2.9
12_02_1174 - 26696869-26698191 29 3.9
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 3.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.9
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 29 5.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.1
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 29 5.1
04_04_1687 - 35365766-35366356,35367137-35368135 28 9.0
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 30.7 bits (66), Expect = 1.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 357 PPKKTXPXXPPKPPXXPPXXXP 422
PP +T P PP PP PP P
Sbjct: 74 PPPQTPPSPPPPPPPPPPPPPP 95
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 345 GGXXPPKKTXPXXPPKPPXXPPXXXP 422
G PP+ P PP PP PP P
Sbjct: 260 GSGGPPRPPPPQVPPPPPQAPPPPPP 285
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +3
Query: 237 PXLXXTPXXPXXPXXGFXPIXXXNFXXXXXXSXKKXGGXXPPKKTXPXXPPKP-PXXPPX 413
P L TP P P P+ + K G PP + P PP+P P PP
Sbjct: 64 PPLQPTPGVPPLPNPDVPPMNKPDVPPMP----KPDGPPIPPVQPCPDQPPQPKPDGPPL 119
Query: 414 XXP 422
P
Sbjct: 120 PNP 122
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 357 PPKKTXPXXPPKPPXXPPXXXPXXIXXXP 443
PP P PP PP PP P + P
Sbjct: 182 PPSLQPPSPPPPPPTRPPSVKPPVVQPKP 210
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 357 PPKKTXPXXPPKPPXXPP 410
PP +T P PP PP PP
Sbjct: 57 PPPRTLPPPPPPPPPQPP 74
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/79 (26%), Positives = 22/79 (27%)
Frame = +3
Query: 171 PXKXXXXXXPPPKPKKXFFXXGPXLXXTPXXPXXPXXGFXPIXXXNFXXXXXXSXKKXGG 350
P K PPP P K P P P P + KK G
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
Query: 351 XXPPKKTXPXXPPKPPXXP 407
PP K PP P P
Sbjct: 378 PPPPPKGGASRPPAAPGVP 396
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = +3
Query: 357 PPKKTXPXXPPK-PPXXPPXXXPXXIXXXPXXXKKXXFSPXXGXXPXKXXGXXLXXPKG 530
PPK P PPK PP PP P P K P K G PKG
Sbjct: 331 PPKAAPPPPPPKGPPPPPPAKGP-----PPPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 357 PPKKTXPXXPPKPPXXPPXXXP 422
PP+ P PP PP PP P
Sbjct: 258 PPQSVRPPPPPPPPPPPPPMPP 279
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/81 (24%), Positives = 23/81 (28%)
Frame = +3
Query: 201 PPKPKKXFFXXGPXLXXTPXXPXXPXXGFXPIXXXNFXXXXXXSXKKXGGXXPPKKTXPX 380
PP P + F GP P P + P S + PP P
Sbjct: 62 PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPP--PPYGVNSSQPPPPPPPPPSPPPS 119
Query: 381 XPPKPPXXPPXXXPXXIXXXP 443
PP PP P P P
Sbjct: 120 APPPPPPPPTQPPPREAQLAP 140
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 799 GGGGVFKNFPKXKXGNXG-GNKGX--KWXXXXGGXRGGPKRAI 680
GGG V++N G G G G KW GG GGP+ +
Sbjct: 67 GGGNVWRNPHSGGGGGRGAGGAGGPNKWGRGPGGADGGPRHKV 109
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 357 PPKKTXPXXPPKPPXXPP 410
PP T P PP PP PP
Sbjct: 4 PPAATAPPPPPPPPPPPP 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,176
Number of Sequences: 37544
Number of extensions: 151277
Number of successful extensions: 1568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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