Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_D01
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 249 3e-66
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 244 6e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 5e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 1e-06
10_08_0285 - 16493678-16493750,16493824-16494380,16494657-164947... 32 0.54
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 2.2
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 6.6
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 8.7
04_01_0440 + 5746474-5746662,5746895-5747251 28 8.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 249 bits (609), Expect = 3e-66
Identities = 112/148 (75%), Positives = 128/148 (86%)
Frame = +3
Query: 72 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 251
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 252 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 431
G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 432 PGVRFKVVKVANVSLLALYKEKKERPRS 515
PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 241 bits (589), Expect = 7e-64
Identities = 109/141 (77%), Positives = 123/141 (87%)
Frame = +3
Query: 87 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 266
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 267 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 447 KVVKVANVSLLALYKEKKERP 509
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 244 bits (598), Expect = 6e-65
Identities = 111/143 (77%), Positives = 125/143 (87%)
Frame = +3
Query: 87 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 266
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 267 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 447 KVVKVANVSLLALYKEKKERPRS 515
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (359), Expect = 5e-36
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = +3
Query: 93 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 272
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 273 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 398
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 378 DEVLVAGFGRKGHAVGDIPGVRFKVVK 458
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>10_08_0285 -
16493678-16493750,16493824-16494380,16494657-16494798,
16495349-16495459,16495593-16496812
Length = 700
Score = 32.3 bits (70), Expect = 0.54
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -2
Query: 242 EDDALCVRCTTE-RVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSSGFTHLDSTTPI 66
EDD + +CTT+ +++L F + G + S+ + V + SS +TH +T+
Sbjct: 453 EDDVVLEKCTTKTKMNLFFISQSGCQSLTYQISISNGKLSVYLLKRGSSVWTHCKTTSRD 512
Query: 65 GYGWEKQNLKGFPIVXR 15
EK N+ GF ++ R
Sbjct: 513 ADLTEKINISGFVVLKR 529
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -3
Query: 412 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 236
P P+T S S+ F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 235 MPF 227
PF
Sbjct: 337 SPF 339
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 427 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 317
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 409 LRPNPATSTSSFSSMWFRQPSRGT 338
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 146 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 244
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,065,185
Number of Sequences: 37544
Number of extensions: 418800
Number of successful extensions: 1113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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