Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C24
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   159   5e-40
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    30   0.50 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   4.7  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    26   8.1  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  159 bits (386), Expect = 5e-40
 Identities = 73/122 (59%), Positives = 100/122 (81%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ 
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIV 119

Query: 455 RR 460
           R+
Sbjct: 120 RK 121


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 382 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLTFVVSTYNLNFIVFANRH 233
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 28  EPLRFALSISVLSRVVLAEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASLDV 186
           E L  AL+   ++ +V AE  +NE+  +    + + QE++ + +  YK   D+
Sbjct: 463 EELTVALNSGKMNAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDI 515


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +1

Query: 28  EPLRFALSISVLSRVVLAEERQNEVQQAGDFLKKEKQEEAFQCSFTYKASLDVLSPV*GT 207
           +PLR  LSI + ++  L E ++   +   D  KKE +    +   T K S  V     G 
Sbjct: 179 QPLR-TLSIEMAAKNALKEAKRENAKVPKDVSKKEAKTTKSKEKATKKTSSSVPKQSTGE 237

Query: 208 KTKIQCKI 231
            TK   K+
Sbjct: 238 NTKKAVKL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,151
Number of Sequences: 5004
Number of extensions: 49157
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)