Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C24
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 191 7e-49
12_01_0323 - 2459854-2460306 190 2e-48
11_01_0317 - 2365493-2365786,2365825-2365953 152 3e-37
01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650... 29 3.7
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 6.5
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 6.5
>01_01_0263 + 2136858-2137331
Length = 157
Score = 191 bits (465), Expect = 7e-49
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +2
Query: 95 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 455 RRAKGRLAALGKDKGKY 505
R+A+GR A K KGK+
Sbjct: 120 RKARGR--AADKAKGKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 190 bits (462), Expect = 2e-48
Identities = 93/137 (67%), Positives = 115/137 (83%)
Frame = +2
Query: 95 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 455 RRAKGRLAALGKDKGKY 505
R+A GR A K KGK+
Sbjct: 120 RKASGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 152 bits (369), Expect = 3e-37
Identities = 82/137 (59%), Positives = 102/137 (74%)
Frame = +2
Query: 95 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV VRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47
Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDRKAILD
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106
Query: 455 RRAKGRLAALGKDKGKY 505
R+A GR A K KGK+
Sbjct: 107 RKASGR--AADKAKGKF 121
>01_06_1361 -
36663859-36663985,36664353-36664543,36664746-36665009,
36665215-36665373,36665476-36665679,36665765-36665983,
36666191-36666322,36666406-36666523,36666670-36666854,
36667263-36667355,36667819-36668008,36668500-36668585,
36668671-36668847,36669141-36669320,36669423-36669623
Length = 841
Score = 29.5 bits (63), Expect = 3.7
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +2
Query: 68 VSFWLKSDRMKFNKQVTSSRRK---NRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP 238
V+ WLK+D+ N + + RK + K H S ++ L+K + V P
Sbjct: 506 VTKWLKTDQWTSNLDLLTGLRKFADDEKLHAEWAS--AKLASKKRLAKHVLDVTGVTIDP 563
Query: 239 IRKDDEVQVVRGH-YKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVG 388
D +Q+ R H YK Q + + VYR K + + +R+K T +G
Sbjct: 564 NSLFD-IQIKRIHEYKRQLLNILGAVYRYKKLKGMSAEERQKVTPRTVMIG 613
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 49 SISVLSRVVLAEERQNEVQQAGDFLKKEKQEEAFQCSF 162
S+ + RV +AEE++ E Q+ LKK++ EE + +F
Sbjct: 15 SLRNIERVWVAEEKEKEEQRKIQELKKQQDEEREKAAF 52
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +2
Query: 98 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 259
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 260 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 343
QV+ G KG +VG+V ++++ V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,891
Number of Sequences: 37544
Number of extensions: 329745
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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