Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C24
         (878 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p pro...   236   3e-62
AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA...   236   3e-62
BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p pro...    30   4.8  
AE014297-1024|AAF54439.1| 1080|Drosophila melanogaster CG16908-P...    30   4.8  
AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA...    30   4.8  

>AY071133-1|AAL48755.1|  149|Drosophila melanogaster RE17611p
           protein.
          Length = 149

 Score =  236 bits (577), Expect = 3e-62
 Identities = 110/137 (80%), Positives = 124/137 (90%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MK N  V+SSRRKNRKRHF APSHIRR LMS+PLSKELRQK+NV+SMPIR+DDEVQV+RG
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
           H+KG QVGKV+Q YRKKFVVY+E+IQRE ANG   YVGIHPSK +IVKLK++KDRKAIL+
Sbjct: 61  HFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIHPSKVLIVKLKLDKDRKAILE 120

Query: 455 RRAKGRLAALGKDKGKY 505
           RR KGRLAALGKDKGKY
Sbjct: 121 RRGKGRLAALGKDKGKY 137


>AE014296-3077|AAF49215.1|  149|Drosophila melanogaster CG6846-PA
           protein.
          Length = 149

 Score =  236 bits (577), Expect = 3e-62
 Identities = 110/137 (80%), Positives = 124/137 (90%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MK N  V+SSRRKNRKRHF APSHIRR LMS+PLSKELRQK+NV+SMPIR+DDEVQV+RG
Sbjct: 1   MKQNPFVSSSRRKNRKRHFQAPSHIRRRLMSAPLSKELRQKYNVRSMPIRRDDEVQVIRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
           H+KG QVGKV+Q YRKKFVVY+E+IQRE ANG   YVGIHPSK +IVKLK++KDRKAIL+
Sbjct: 61  HFKGNQVGKVVQAYRKKFVVYVEKIQRENANGTNVYVGIHPSKVLIVKLKLDKDRKAILE 120

Query: 455 RRAKGRLAALGKDKGKY 505
           RR KGRLAALGKDKGKY
Sbjct: 121 RRGKGRLAALGKDKGKY 137


>BT003208-1|AAO24963.1|  478|Drosophila melanogaster SD23764p
           protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 248 DDEVQVVRGHYKGQQ-VGKVMQVYRKKFVVY 337
           D  V + RGHY+G   +GK+  V+R  F+ +
Sbjct: 98  DQPVYIGRGHYEGHLIIGKISSVHRALFIAF 128


>AE014297-1024|AAF54439.1| 1080|Drosophila melanogaster CG16908-PA
           protein.
          Length = 1080

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
 Frame = +1

Query: 43  ALSISVLSRVV--LAEERQNE---VQQAGDFLKK--EKQEEAFQCSFTYKAS 177
           +++I  L R++  + EE  NE   ++  GD  +K  +  EEA QC FT+ AS
Sbjct: 228 SMAIQALGRIICIMFEETTNEFIKMRYDGDAFRKLFKNNEEAHQCDFTFFAS 279


>AE013599-1621|AAF58436.2|  478|Drosophila melanogaster CG3884-PA,
           isoform A protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 248 DDEVQVVRGHYKGQQ-VGKVMQVYRKKFVVY 337
           D  V + RGHY+G   +GK+  V+R  F+ +
Sbjct: 98  DQPVYIGRGHYEGHLIIGKISSVHRALFIAF 128


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,539,412
Number of Sequences: 53049
Number of extensions: 565865
Number of successful extensions: 1400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)