Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C24
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   164   8e-41
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   131   6e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   131   6e-31
Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   7.7  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  164 bits (398), Expect = 8e-41
 Identities = 76/137 (55%), Positives = 106/137 (77%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILD 454
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++
Sbjct: 61  RHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 455 RRAKGRLAALGKDKGKY 505
           R+A GR    G  KGK+
Sbjct: 120 RKAAGRSRVTGILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  131 bits (317), Expect = 6e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 403
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  131 bits (317), Expect = 6e-31
 Identities = 60/103 (58%), Positives = 82/103 (79%)
 Frame = +2

Query: 95  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 274
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 275 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 403
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical
           protein F58G1.2 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 575 FKNFIYLKNYLFKRPPWLWQFPRCI--YPCLCQAQPVCPLLCDRGLLC 438
           F+N I   N+L K+ P   +F +C+  + CL  A  +    CD   LC
Sbjct: 238 FRNDISFNNHLTKKHPECAEFVQCLHCFKCLPSAADLPTHDCDLTYLC 285


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 575 FKNFIYLKNYLFKRPPWLWQFPRCI 501
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,228
Number of Sequences: 27780
Number of extensions: 288891
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)