Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C23
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
09_06_0323 - 22337217-22337450,22338263-22339204                       28   8.8  
01_01_0650 - 4948852-4950012                                           28   8.8  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 522 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 680
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 588 GGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSG--SVALSHSSRCRY 746
           GGE  ++    RRF   AP  ALL R  +L     P SP+   + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQL--RAAPASPAAMAAAAVAHSTRCRF 215


>01_01_0650 - 4948852-4950012
          Length = 386

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = +3

Query: 534 SIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGS 713
           S+ S+PL      D      +  + Y  T+     +P+  L+  P   P   PP SP G+
Sbjct: 189 SVASSPLAE--SYDGSPLRRQAFESYL-TKTIMSSSPTSTLMSPPKSPPSESPPLSPDGA 245

Query: 714 VALSHSS 734
            A+   S
Sbjct: 246 AAIRRGS 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,314,973
Number of Sequences: 37544
Number of extensions: 517590
Number of successful extensions: 1566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)