Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C23
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical ...    30   2.6  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   3.4  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   3.4  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   3.4  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.9  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.9  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.9  

>AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical
           protein Y38H8A.1 protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 166 HFFHCILVVVCPNSSMYLIMSGSKLTLXKGRSAAAGTNNLNLKGFPIV 23
           HF H +LVV+  NS +  + +  K    +  S +A  +N+ L+  P++
Sbjct: 3   HFIHSVLVVMFLNSFVLFVAACMKTIPTEAASISAQLDNVPLRRMPVL 50


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 552  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 731
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 732  SRCRYLSSV 758
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 552  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 731
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 732  SRCRYLSSV 758
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 552  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 731
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 732  SRCRYLSSV 758
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 478 SHVLSCVIXLILWITVLPPLSELIPLAA 395
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 478 SHVLSCVIXLILWITVLPPLSELIPLAA 395
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 478 SHVLSCVIXLILWITVLPPLSELIPLAA 395
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,104
Number of Sequences: 27780
Number of extensions: 392985
Number of successful extensions: 1073
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)