Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C21
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    30   0.38 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    28   2.0  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   2.7  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    27   4.7  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   8.1  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +1

Query: 613 GYVPSHT----GYQPYEPPTADIYTQQSYSAPXSYQDGGYSA 726
           GY P+      G   Y PP  + Y QQ Y+ P  Y  GGY A
Sbjct: 11  GYAPAPPQQAYGGPNYYPPQQN-YPQQGYAPPQGYPQGGYPA 51


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +3

Query: 612  WICTITHWISAI*ATNC*YLYTTIIQ---CTXLISRWWLLCTGSCSGHFWI*FQWLWGGL 782
            W+     W+ AI A +    +T   +   C+ L S     C        W+ F WLWG L
Sbjct: 1032 WLSYAATWVYAIAAASGPLYFTLNFEDEHCSGLGSSITRACVLQGVQQLWLSFLWLWGTL 1091


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 312 WSWRNANERSWWKRWP 359
           +SW N N   +W RWP
Sbjct: 248 YSWSNRNSGLYWTRWP 263


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 610 NGYVPS-HTGYQPYEPPTADIYTQQSYSAPXSYQDGGYSAP 729
           N  +P+ +  YQ    PT       +YSAP S+    +SAP
Sbjct: 119 NTLLPALNDAYQACPKPTRKNGNNDTYSAPQSFNGNEFSAP 159


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 328 AFLHDQHL--YH-HAVRSLLGLYHLCLSYHQAPLY 233
           +F H  HL  YH HAV ++ GLY +  S H   L+
Sbjct: 449 SFAHPFHLERYHLHAVAAMGGLYQIMSSTHLKNLF 483


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
 Frame = -1

Query: 796 LLSIHSPP--HNHWNYIQK*PEQLPVQSNHHLDMSXVHCMIVVYKYQQLVAHMADIQCVM 623
           LL ++ PP    H++Y        P     H  +S  +    VY   +   HM+D +   
Sbjct: 455 LLHLNRPPPIETHYSYESNNSSFSPYYHKRHRQISPYYPTSSVYGVYESPPHMSDSRISR 514

Query: 622 VHIHLIEEVDVQQIPY 575
            H+ L         PY
Sbjct: 515 QHMPLTHTTYEPSAPY 530


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 699 LISRWWLLCTGSCSGHFWI*FQWL-WGGLWILNRW 800
           LI+ WW  C    S  FWI   W+   GL+  N W
Sbjct: 341 LITPWWATCCIFTSFVFWI---WIVLPGLYYQNYW 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,778
Number of Sequences: 5004
Number of extensions: 37623
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)