Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C21
(880 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071099-1|AAL48721.1| 153|Drosophila melanogaster RE16005p pro... 34 0.30
AE014296-1868|AAF50120.2| 153|Drosophila melanogaster CG14147-P... 34 0.30
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 31 1.6
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 31 1.6
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 31 1.6
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 31 1.6
AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p pro... 31 2.1
AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB ... 31 2.1
BT016021-1|AAV36906.1| 662|Drosophila melanogaster RE15373p pro... 30 4.8
AY095075-1|AAM11403.1| 295|Drosophila melanogaster RE24507p pro... 30 4.8
AE014298-2002|AAN09579.1| 662|Drosophila melanogaster CG11584-P... 30 4.8
AE014296-853|AAF47905.2| 295|Drosophila melanogaster CG15022-PA... 30 4.8
>AY071099-1|AAL48721.1| 153|Drosophila melanogaster RE16005p
protein.
Length = 153
Score = 33.9 bits (74), Expect = 0.30
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Frame = -1
Query: 400 QLPELVREDLEVDHGHLFHHDLSLAFLHDQH---------LYHHAVRSL--LGLYHLCLS 254
+LP L+ D E+ H H S A +HD H L HH V SL +H L
Sbjct: 34 ELPHLL--DAEIHHSDGIHLGHSAALVHDDHHLNHHLDHHLDHHLVESLPTTVYHHEPLH 91
Query: 253 YHQAPLYC*SHHVEVVHH 200
YH A L H VVHH
Sbjct: 92 YHYARL----HSAPVVHH 105
>AE014296-1868|AAF50120.2| 153|Drosophila melanogaster CG14147-PA
protein.
Length = 153
Score = 33.9 bits (74), Expect = 0.30
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Frame = -1
Query: 400 QLPELVREDLEVDHGHLFHHDLSLAFLHDQH---------LYHHAVRSL--LGLYHLCLS 254
+LP L+ D E+ H H S A +HD H L HH V SL +H L
Sbjct: 34 ELPHLL--DAEIHHSDGIHLGHSAALVHDDHHLNHHLDHHLDHHLVESLPTTVYHHEPLH 91
Query: 253 YHQAPLYC*SHHVEVVHH 200
YH A L H VVHH
Sbjct: 92 YHYARL----HSAPVVHH 105
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 604 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPXS--YQDGGYSAPAAA 738
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1629 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1678
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 604 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPXS--YQDGGYSAPAAA 738
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 148 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 197
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 604 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPXS--YQDGGYSAPAAA 738
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1169 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1218
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 31.5 bits (68), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 604 QSNGYVPSHTGYQPYEP---PTADIYTQQSYSAPXS--YQDGGYSAPAAA 738
QS GY PS +GY P P PT + S++ S Y G +P+++
Sbjct: 1627 QSTGYSPSSSGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSS 1676
>AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p protein.
Length = 1168
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 619 VPSHTGYQPYEPPTADIYTQQSYSAP 696
V S++G + Y PP AD TQ+S SAP
Sbjct: 1093 VRSNSGIRTYRPPAADEETQRSASAP 1118
>AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB
protein.
Length = 1168
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 619 VPSHTGYQPYEPPTADIYTQQSYSAP 696
V S++G + Y PP AD TQ+S SAP
Sbjct: 1093 VRSNSGIRTYRPPAADEETQRSASAP 1118
>BT016021-1|AAV36906.1| 662|Drosophila melanogaster RE15373p
protein.
Length = 662
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 622 PSHTGYQPYEPPTADIYTQQSYSAPXSYQDGGYSAPAAA 738
P+ Q Y P QQ+YSAP YSAPA A
Sbjct: 297 PAPAIQQTYSAPAPAPVVQQTYSAPAPAPQQTYSAPAPA 335
>AY095075-1|AAM11403.1| 295|Drosophila melanogaster RE24507p
protein.
Length = 295
Score = 29.9 bits (64), Expect = 4.8
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -1
Query: 364 DHGHLFHHDLSLAFLHDQHLY----HHAVRSLLGLYHLCLSYHQAPLYC*SHHVE 212
DHGH HH HD H Y HH S + L + H P + HH E
Sbjct: 31 DHGHDHHHHHDHDHDHDHHHYDVHSHHHSPSSHDHHDLHIDLHYQPDHHHHHHQE 85
>AE014298-2002|AAN09579.1| 662|Drosophila melanogaster CG11584-PB
protein.
Length = 662
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 622 PSHTGYQPYEPPTADIYTQQSYSAPXSYQDGGYSAPAAA 738
P+ Q Y P QQ+YSAP YSAPA A
Sbjct: 297 PAPAIQQTYSAPAPAPVVQQTYSAPAPAPQQTYSAPAPA 335
>AE014296-853|AAF47905.2| 295|Drosophila melanogaster CG15022-PA
protein.
Length = 295
Score = 29.9 bits (64), Expect = 4.8
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -1
Query: 364 DHGHLFHHDLSLAFLHDQHLY----HHAVRSLLGLYHLCLSYHQAPLYC*SHHVE 212
DHGH HH HD H Y HH S + L + H P + HH E
Sbjct: 31 DHGHDHHHHHDHDHDHDHHHYDVHSHHHSPSSHDHHDLHIDLHYQPDHHHHHHQE 85
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.316 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,200,470
Number of Sequences: 53049
Number of extensions: 490583
Number of successful extensions: 1852
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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