Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C20
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    31   0.17 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   1.2  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    28   1.6  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   6.3  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +2

Query: 284 EYLHSSSYEAKLQVLANLANFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAGV 463
           + + +SS + + Q    L N A D      I     L   L +L++  +  LI  ++A +
Sbjct: 258 QLMDTSSPKVQCQAALALRNLASDERYQIEIVQSNALPSLLRLLRSSYLP-LILASVACI 316

Query: 464 CNLCLDPLNADYILTHLGLKPLFRLLKSSDTDTV-ADTITTL 586
            N+ + PLN   I+    L+PL  LL  ++ + +    ++TL
Sbjct: 317 RNISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTL 358


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +2

Query: 308 EAKLQVLANLANFAYDPVNY--SYIRDVGVLDIFLYVLKNETIGRLI---RYAIAGVCNL 472
           E  ++ L +L+   Y  ++   +Y  D  + D+ + +LK  T   L+   RY+ A V  L
Sbjct: 448 ELIVECLGSLSRIPYFLIDLYVNYDCDPQMSDLAIDLLKVLTRNCLVDSARYSTANVPPL 507

Query: 473 CLDPLNADYILTHLGLKPLFRLLKSSDTDTVADTI 577
           CLD L       H  L+P +    ++  D VA T+
Sbjct: 508 CLDALLNFIYYFHEHLQPCYNDPNNTFKDDVAKTL 542


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 497 YILTHLGLKPLFRLLKSSDTDTVADTITTLIYMYNEKTXTEITDQDV 637
           YI+   GL  L +L     + + A  I  +IY Y     TE+  + V
Sbjct: 553 YIIVQYGLFALTKLSARLGSSSTASRIDKIIYSYKRNKNTEVQQRSV 599


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 212 RAHLQKRTPKDGTDREAYLSLLVDEYLHSSSY--EAKLQVLANLANF--AYDPVNYSYIR 379
           +A    R P D T  E  ++     +++   +  EA+ QV     +F  +Y+  ++SY+ 
Sbjct: 439 KAPENNRDPIDFTKYEQKITAFKHAHIYDKIFLEEARKQVFHCFLSFIDSYNEEDFSYLS 498

Query: 380 DVGVLD 397
           D+G+ +
Sbjct: 499 DIGITE 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,613
Number of Sequences: 5004
Number of extensions: 57354
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)