Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C20
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383...    96   3e-20
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    29   5.0  
07_01_0234 + 1715338-1718233,1718351-1718760                           29   5.0  

>11_06_0033 -
           19437746-19437916,19438063-19438145,19438266-19438359,
           19438478-19438551,19438825-19438861,19440767-19440844,
           19440927-19441022,19441719-19441815,19441910-19442015,
           19442136-19442208,19442537-19442680,19443241-19443681
          Length = 497

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
 Frame = +2

Query: 275 LVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAI 454
           LV ++  ++  E+K +++ANLANFAYDP NY+++R + +L++FL  +  E   RLI + I
Sbjct: 347 LVTQFQEATDEESKERIVANLANFAYDPYNYTFMRQLNILELFLDCI-TEPNERLIEFGI 405

Query: 455 AGVCNLCLDPLNADYILTHLGLKPL-FRLLKSSDTDTVADTITTLIYMYNEKTXTEITDQ 631
            G+CN C DP NA  ++TH G  PL  + L S   +TV   +  L Y+ N  T  +I   
Sbjct: 406 GGICNSCADPANAS-VITHCGGIPLVIQCLSSPVKNTVNYALGALYYLCNPSTKKDILKP 464

Query: 632 DVINMMSNLKTTQDLR--IVNLATVFL 706
           +V+  +       D      NLA  FL
Sbjct: 465 EVLKAVREYAVAGDANTSFRNLANAFL 491


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +2

Query: 503 LTHLGLKPLFRLLKS--SDTDTVADTITT-LIYMYNEKTXTE--ITDQDVINMMSNLKTT 667
           ++HL L+ +  L++   S TD++ D I    I M N    TE  +    V+++++   T 
Sbjct: 443 ISHLDLRFVIELIRDEKSVTDSMIDNIQLPYIRMLNLALKTEGHVYGASVLHILTKRTTI 502

Query: 668 QDLRIVNLATVFLQNVCK 721
            +LR+VN       + CK
Sbjct: 503 AELRLVNQEKFKSDDACK 520


>07_01_0234 + 1715338-1718233,1718351-1718760
          Length = 1101

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +2

Query: 197  LMFSSRAHLQKRTPKDGTDREAYLSLL---VD-----EYLHSSSYEAKLQVLANLANFAY 352
            L F     LQK    +G  R  +L  L   +D     +YLH+  YE  L      +N  +
Sbjct: 868  LEFMPNGSLQKHLHSEGMPRLGFLKRLDTMLDVSMAMDYLHNQHYEVVLHCDLKPSNVLF 927

Query: 353  DPVNYSYIRDVGVLDIFL 406
            D    +++ D G+  + L
Sbjct: 928  DDEMTAHVADFGIAKLLL 945


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,908
Number of Sequences: 37544
Number of extensions: 300071
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)