Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C20
         (890 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071699-1|AAL49321.1|  204|Drosophila melanogaster RH16768p pro...   109   4e-24
AE014297-2203|AAN13709.1|  204|Drosophila melanogaster CG14881-P...   109   4e-24
AE014297-2202|AAF55311.2|  286|Drosophila melanogaster CG14881-P...   108   1e-23
AF074957-1|AAC26055.1|  543|Drosophila melanogaster karyopherin ...    46   5e-05
AE014296-3220|AAF49109.1|  543|Drosophila melanogaster CG8548-PA...    46   5e-05
AJ252085-1|CAB64597.1|  542|Drosophila melanogaster Importin-alp...    45   1e-04
BT016073-1|AAV36958.1|  331|Drosophila melanogaster LP05312p pro...    42   0.002
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros...    30   4.9  

>AY071699-1|AAL49321.1|  204|Drosophila melanogaster RH16768p
           protein.
          Length = 204

 Score =  109 bits (263), Expect = 4e-24
 Identities = 72/187 (38%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
 Frame = +2

Query: 200 MFSSRAHLQKRTPKDGTDREAYLSLLVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIR 379
           MFSS   L++RTP  G DR  Y+  LVDEY  +++ EA+ QV ANLANFAYDP+N+S++ 
Sbjct: 1   MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFAYDPINWSHLL 60

Query: 380 DVGVLDIFLYVLKNETIGRLIR-YAIAGVCNLCLDPLNADYILTHLGLKPLFRLLKSSDT 556
           +   LD+F+  L  ET  +L++ + IA +CNLCLD   A +I     LK L  L   +D 
Sbjct: 61  EADALDVFVASL--ETQDQLLKVHGIAALCNLCLDKTAAKFIREQ--LKLLTGLFVRTDH 116

Query: 557 DTVADTITTLIYMYNEKTXTEITDQDVINMMSNLKTTQ-------DLRIVNLATVFLQNV 715
             +   + +L   Y      E T++D++   + L+T Q       D RIV L  + LQ+ 
Sbjct: 117 PEI--VLHSLALFYQLLEFGERTERDLLLSPAVLRTVQEWRVKAHDERIVKLCQLLLQDF 174

Query: 716 CKTT*IV 736
              T +V
Sbjct: 175 ATRTEVV 181


>AE014297-2203|AAN13709.1|  204|Drosophila melanogaster CG14881-PB,
           isoform B protein.
          Length = 204

 Score =  109 bits (263), Expect = 4e-24
 Identities = 72/187 (38%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
 Frame = +2

Query: 200 MFSSRAHLQKRTPKDGTDREAYLSLLVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIR 379
           MFSS   L++RTP  G DR  Y+  LVDEY  +++ EA+ QV ANLANFAYDP+N+S++ 
Sbjct: 1   MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFAYDPINWSHLL 60

Query: 380 DVGVLDIFLYVLKNETIGRLIR-YAIAGVCNLCLDPLNADYILTHLGLKPLFRLLKSSDT 556
           +   LD+F+  L  ET  +L++ + IA +CNLCLD   A +I     LK L  L   +D 
Sbjct: 61  EADALDVFVASL--ETQDQLLKVHGIAALCNLCLDKTAAKFIREQ--LKLLTGLFVRTDH 116

Query: 557 DTVADTITTLIYMYNEKTXTEITDQDVINMMSNLKTTQ-------DLRIVNLATVFLQNV 715
             +   + +L   Y      E T++D++   + L+T Q       D RIV L  + LQ+ 
Sbjct: 117 PEI--VLHSLALFYQLLEFGERTERDLLLSPAVLRTVQEWRVKAHDERIVKLCQLLLQDF 174

Query: 716 CKTT*IV 736
              T +V
Sbjct: 175 ATRTEVV 181


>AE014297-2202|AAF55311.2|  286|Drosophila melanogaster CG14881-PA,
           isoform A protein.
          Length = 286

 Score =  108 bits (259), Expect = 1e-23
 Identities = 64/162 (39%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
 Frame = +2

Query: 200 MFSSRAHLQKRTPKDGTDREAYLSLLVDEYLHSSSYEAKLQVLANLANFAYDPVNYSYIR 379
           MFSS   L++RTP  G DR  Y+  LVDEY  +++ EA+ QV ANLANFAYDP+N+S++ 
Sbjct: 1   MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFAYDPINWSHLL 60

Query: 380 DVGVLDIFLYVLKNETIGRLIR-YAIAGVCNLCLDPLNADYILTHLGLKPLFRLLKSSDT 556
           +   LD+F+  L  ET  +L++ + IA +CNLCLD   A +I     LK L  L   +D 
Sbjct: 61  EADALDVFVASL--ETQDQLLKVHGIAALCNLCLDKTAAKFIREQ--LKLLTGLFVRTDH 116

Query: 557 DTVADTITTLIYMYNEKTXTEITDQDVINMMSNLKTTQDLRI 682
             +   + +L   Y      E T++D++   + L+T Q+ R+
Sbjct: 117 PEI--VLHSLALFYQLLEFGERTERDLLLSPAVLRTVQEWRV 156


>AF074957-1|AAC26055.1|  543|Drosophila melanogaster karyopherin
           alpha 1 protein.
          Length = 543

 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 284 EYLHSSSYEAKLQVLANLANFAYD-PVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAG 460
           + L S   + + Q +  L N A D P+   ++   G+L+  L+VL N     +IR A+  
Sbjct: 187 DLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWT 246

Query: 461 VCNLCLDPLN-ADYILTHLGLKPLFRLLKSSDTDTVADTITTLIYM 595
           + NLC      AD+     GL  L RLLK +D D ++DT   + Y+
Sbjct: 247 LSNLCRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYL 292


>AE014296-3220|AAF49109.1|  543|Drosophila melanogaster CG8548-PA
           protein.
          Length = 543

 Score = 46.4 bits (105), Expect = 5e-05
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 284 EYLHSSSYEAKLQVLANLANFAYD-PVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAG 460
           + L S   + + Q +  L N A D P+   ++   G+L+  L+VL N     +IR A+  
Sbjct: 187 DLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWT 246

Query: 461 VCNLCLDPLN-ADYILTHLGLKPLFRLLKSSDTDTVADTITTLIYM 595
           + NLC      AD+     GL  L RLLK +D D ++DT   + Y+
Sbjct: 247 LSNLCRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYL 292


>AJ252085-1|CAB64597.1|  542|Drosophila melanogaster Importin-alpha1
           protein.
          Length = 542

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = +2

Query: 284 EYLHSSSYEAKLQVLANLANFAYD-PVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAG 460
           + L S   + + Q +  L N A D P+   ++   G+L+  L+VL N     +IR A+  
Sbjct: 187 DLLSSPHDDVQEQAVWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWT 246

Query: 461 VCNLCLDPLN-ADYILTHLGLKPLFRLLKSSDTDTVADTITTLIYM 595
           + NLC      AD+     GL  L RLLK +D D  +DT   + Y+
Sbjct: 247 LSNLCRGKSPPADFAKISHGLPILARLLKYTDADVQSDTCWAIGYL 292


>BT016073-1|AAV36958.1|  331|Drosophila melanogaster LP05312p
           protein.
          Length = 331

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 386 GVLDIFLYVLKNETIGRLIRYAIAGVCNLCLDPLN-ADYILTHLGLKPLFRLLKSSDTDT 562
           G+L+  L+VL N     +IR A+  + NLC      AD+     GL  L RLLK +D D 
Sbjct: 10  GILEPLLHVLSNSDRITMIRNAVWTLSNLCRGKSPPADFAKISHGLPILARLLKYTDADV 69

Query: 563 VADTITTLIYM 595
           ++DT   + Y+
Sbjct: 70  LSDTCWAIGYL 80


>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
            Drosophila melanogastertransposable element 297. ).
          Length = 1059

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 491  ADYILTHLGLKPLFRLLKSSDTDTVA-DTITTLIYMYNEKTXTEITDQ 631
            AD    H  +    R++ SSD + V    I T++Y YN+K   + T Q
Sbjct: 910  ADVERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDTTGQ 957


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,822,764
Number of Sequences: 53049
Number of extensions: 566378
Number of successful extensions: 1357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)