Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C19
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    35   0.100
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212...    27   4.6  
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649...    29   6.6  
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475...    28   8.7  
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681...    28   8.7  
02_05_0956 - 33064104-33066425                                         28   8.7  
01_06_1494 + 37756872-37757137,37757318-37757407,37758392-377584...    28   8.7  

>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 259 MVPGRQQRVHPAVRVGHAHAQRVRTAHARHL--GSPAAIAGHEPRAEPHHQVVVRLAGST 86
           + PGR       V  G+   + +R A +R+L  G PA   G+EP  E   Q+V R  G  
Sbjct: 237 VAPGRLHVARAMVEAGYV--ENIRQAFSRYLYDGGPAYATGNEPAGESVVQLVCRNGGVA 294

Query: 85  MLA 77
           +LA
Sbjct: 295 VLA 297


>09_04_0318 -
           16620177-16620582,16620686-16620765,16620873-16621213,
           16621298-16621559
          Length = 362

 Score = 27.1 bits (57), Expect(2) = 4.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 405 PPPSSTARHIEMST 364
           PPPSS +RH+E ST
Sbjct: 81  PPPSSESRHLEAST 94



 Score = 20.6 bits (41), Expect(2) = 4.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 429 STSCGGSLPPPS 394
           S+ CGGS P P+
Sbjct: 50  SSRCGGSSPEPT 61


>05_04_0413 -
           21063868-21064344,21064416-21064482,21064865-21064948,
           21065028-21065158,21065504-21065560,21065818-21065866,
           21067357-21067442,21067715-21067792,21067952-21068074,
           21068705-21068794,21068796-21068849,21068923-21069020,
           21069093-21069160,21069688-21069777,21069870-21070117
          Length = 599

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 232 HPAVRVGHAHAQRVRTAHARHLGSPAAIAGH 140
           HPA  V H  A + R+ H R+L +P   + H
Sbjct: 64  HPASHVYHRVASKCRSLHGRYLATPWLASPH 94


>07_01_0635 +
           4753919-4754090,4754200-4754258,4754377-4754432,
           4754698-4754842,4755506-4755580,4755844-4755933,
           4756218-4756295,4757879-4758376,4758512-4758997
          Length = 552

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 169 LGSPAAIAGHEPRAEPHH---QVVVRLAGSTMLAL 74
           +G+PAAI G E  A+P H   +VVV +A S  + L
Sbjct: 451 VGTPAAIIGDETPAQPRHKGEKVVVAVAPSNEVEL 485


>03_05_0855 +
           28267231-28267603,28267725-28267966,28268071-28268193,
           28268507-28268623,28268739-28268921,28269017-28269158,
           28269379-28269544,28270194-28270212
          Length = 454

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 483 IPRLIGFGATVTLTGLQSSTSCGGSLP 403
           IP+L  FGA V+L G+     CGGS P
Sbjct: 220 IPKLTWFGAIVSLLGI-GLLECGGSPP 245


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 411 SLPPPSSTARHIEMSTPHGSDHTPCEIKTLVSKRKFC 301
           SLPPP ST R   +STP  +    C  K LV  + FC
Sbjct: 171 SLPPPPSTFRGHCISTPSFNATAYCNNK-LVGAKYFC 206


>01_06_1494 +
           37756872-37757137,37757318-37757407,37758392-37758443,
           37759226-37759315,37759520-37759642,37759752-37759850
          Length = 239

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 232 HPAVRVGHAHAQRVRTAHARHLGSPAAIAGH 140
           HPA  + H  A + R+ H R+L +P   + H
Sbjct: 70  HPASEIYHRVASKCRSLHGRYLATPWLASPH 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,694
Number of Sequences: 37544
Number of extensions: 287969
Number of successful extensions: 940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)