Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C19
         (885 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009859-1|AAH09859.2|  525|Homo sapiens INT4 protein protein.         44   0.001
BC008013-1|AAH08013.1|  790|Homo sapiens INT4 protein protein.         44   0.001
BC006369-1|AAH06369.1|  428|Homo sapiens INT4 protein protein.         44   0.001
AJ311904-1|CAC84565.1| 1207|Homo sapiens ADAMTS-19 protein.            31   5.6  

>BC009859-1|AAH09859.2|  525|Homo sapiens INT4 protein protein.
          Length = 525

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
 Frame = +2

Query: 92  AGQPDNDLVVRFSAGLVAGDRCWRAEVTRVRCA-DALRVRVAYPDRRVHAXXXXXXXXXX 268
           AG+ DN L  RF++GLV       A +  V+   + ++V+V YPD +             
Sbjct: 390 AGESDNPL--RFTSGLVVALDV-DATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADF-- 444

Query: 269 XXXXXQNEDGTQNLRLLTKVLISHGVWSEPCGVDISICLAVEEG----------GGREPP 418
                    G    RL+T+V +SH  W+E C V++ + LA              GG   P
Sbjct: 445 ------RNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSP 498

Query: 419 QL-------VELCKPVRVTVAPKPIKR 478
           Q+       +   KPV+V + PKP +R
Sbjct: 499 QVETSIEGTIPFSKPVKVYIMPKPARR 525


>BC008013-1|AAH08013.1|  790|Homo sapiens INT4 protein protein.
          Length = 790

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
 Frame = +2

Query: 92   AGQPDNDLVVRFSAGLVAGDRCWRAEVTRVRCA-DALRVRVAYPDRRVHAXXXXXXXXXX 268
            AG+ DN L  RF++GLV       A +  V+   + ++V+V YPD +             
Sbjct: 655  AGESDNPL--RFTSGLVVALDV-DATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADF-- 709

Query: 269  XXXXXQNEDGTQNLRLLTKVLISHGVWSEPCGVDISICLAVEEG----------GGREPP 418
                     G    RL+T+V +SH  W+E C V++ + LA              GG   P
Sbjct: 710  ------RNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSP 763

Query: 419  QL-------VELCKPVRVTVAPKPIKR 478
            Q+       +   KPV+V + PKP +R
Sbjct: 764  QVETSIEGTIPFSKPVKVYIMPKPARR 790


>BC006369-1|AAH06369.1|  428|Homo sapiens INT4 protein protein.
          Length = 428

 Score = 43.6 bits (98), Expect = 0.001
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
 Frame = +2

Query: 92  AGQPDNDLVVRFSAGLVAGDRCWRAEVTRVRCA-DALRVRVAYPDRRVHAXXXXXXXXXX 268
           AG+ DN L  RF++GLV       A +  V+   + ++V+V YPD +             
Sbjct: 293 AGESDNPL--RFTSGLVVALDV-DATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADF-- 347

Query: 269 XXXXXQNEDGTQNLRLLTKVLISHGVWSEPCGVDISICLAVEEG----------GGREPP 418
                    G    RL+T+V +SH  W+E C V++ + LA              GG   P
Sbjct: 348 ------RNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSP 401

Query: 419 QL-------VELCKPVRVTVAPKPIKR 478
           Q+       +   KPV+V + PKP +R
Sbjct: 402 QVETSIEGTIPFSKPVKVYIMPKPARR 428


>AJ311904-1|CAC84565.1| 1207|Homo sapiens ADAMTS-19 protein.
          Length = 1207

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 381 HIEMSTPHGSDHTPCEIKTLVSKRKFCV 298
           H+EMST  G D T  +   L++++ FCV
Sbjct: 415 HLEMSTNWGEDMTSVDAAILITRKDFCV 442


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,470,580
Number of Sequences: 237096
Number of extensions: 1552141
Number of successful extensions: 4627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4624
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)