Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C19
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    31   1.4  
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
 Frame = -3

Query: 322 SQQTQVLRSILILVVMVER--PEMVPGRQ-QRVHPAVRV-------GHAHAQRVRTAHAR 173
           ++Q QV+R I+  V  V+R  P+  P +Q Q   P +R+        H   Q+ R    +
Sbjct: 82  NRQRQVIRQIIPTVPQVQRQMPQQRPPQQTQNGAPMLRLPVHQIQQAHHLQQQQRQQMQQ 141

Query: 172 HLGSPAAIAGHEPRAEPHHQVVVRLAGSTMLALAHH 65
            + S    A H+ R     Q  VRL     LA  HH
Sbjct: 142 PMPSRRRSAAHQVRQRIQAQNTVRLQQQEQLAQQHH 177


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 78  ASIVEPASLTTTWWCGSARGSWPAI 152
           +SI+   +    WWCG  R  W AI
Sbjct: 124 SSILATLAYCIMWWCGDVRSYWLAI 148


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 78  ASIVEPASLTTTWWCGSARGSWPAI 152
           +SI+   +    WWCG  R  W AI
Sbjct: 124 SSILATLAYCIMWWCGDVRSYWLAI 148


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 78  ASIVEPASLTTTWWCGSARGSWPAI 152
           +SI+   +    WWCG  R  W AI
Sbjct: 118 SSILATLAYCIMWWCGDVRSYWLAI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,287
Number of Sequences: 27780
Number of extensions: 226085
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)