Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C18
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical...    37   0.022
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    30   1.9  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    30   1.9  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    30   1.9  
U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        29   4.5  
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    29   4.5  

>AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical
           protein Y48C3A.20 protein.
          Length = 487

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 483 CVSCFGILQEENWSECFNMVKETLEKKRYECSTFACALSAPIATLLRD 626
           C  CFGI+ +    E    V+E L K  Y+  +F  AL+ P+   LR+
Sbjct: 34  CQLCFGIMDQAMIDEVGEKVQEELSKLPYDSMSFILALNLPVGQTLRE 81


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 88  VVLFFRNCRIFILKN*TTKKIGKLYSFVY 174
           V L F+NCR+F++   T +   +L S+VY
Sbjct: 383 VTLMFQNCRVFLVPESTYRNPSQLTSYVY 411


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 88  VVLFFRNCRIFILKN*TTKKIGKLYSFVY 174
           V L F+NCR+F++   T +   +L S+VY
Sbjct: 383 VTLMFQNCRVFLVPESTYRNPSQLTSYVY 411


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 88  VVLFFRNCRIFILKN*TTKKIGKLYSFVY 174
           V L F+NCR+F++   T +   +L S+VY
Sbjct: 383 VTLMFQNCRVFLVPESTYRNPSQLTSYVY 411


>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 543 KETLEKKRYECSTFACALSAPIATLLRDKAIILHLSDAFKDYKE 674
           K  L K + EC    C  +  +  + RDK + L L+ +F+D++E
Sbjct: 458 KALLAKLKTECG---CQFTQKLENMFRDKELWLTLATSFRDWRE 498


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 543 KETLEKKRYECSTFACALSAPIATLLRDKAIILHLSDAFKDYKE 674
           K  L K + EC    C  +  +  + RDK + L L+ +F+D++E
Sbjct: 458 KALLAKLKTECG---CQFTQKLENMFRDKELWLTLATSFRDWRE 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,329,178
Number of Sequences: 27780
Number of extensions: 332237
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)