Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C17
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   2.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   6.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -2

Query: 196  PVQRPCDVAVTHVSAVASGPTRPQPHVGAGRVATPGXLAQCP---AALPRVP 50
            PV +P  VAV  V A +  P  P+P V A  V  P      P    A P VP
Sbjct: 1103 PVPKP-SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  PGVATRPAPTCGWGRVGPDATAETCVTA 173
           P ++ +P P+  W R+G DA A T  +A
Sbjct: 7   PPLSPKPVPSNTWKRIGIDAFAATAASA 34


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +3

Query: 651 SGSKLNIKIYAIIS*HSLSNV*HLRLNCSFTVYFLIKM*FHSQQSANPVYKSETL 815
           SGSK NI IY++     LS V    L  S T YFLI   +HS    +  Y S T+
Sbjct: 469 SGSK-NIGIYSL-----LSRV----LVISSTAYFLIMFVYHSSWVTSNAYSSPTV 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,457
Number of Sequences: 5004
Number of extensions: 52137
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)