Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_C17
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1081 + 11058119-11059756                                         30   2.8  
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    29   6.6  
12_01_1046 - 10756062-10756326,10757618-10757782,10757901-107582...    28   8.7  
09_06_0081 + 20745627-20748144,20748211-20748308                       28   8.7  
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173...    28   8.7  

>08_01_1081 + 11058119-11059756
          Length = 545

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -2

Query: 196 PVQRPCDVAVTHVSAVASGPTRPQPHVGAGRVATPGXLAQCPAA 65
           P   PCDVA    +AV   P  P+ H G G     G  AQ P+A
Sbjct: 4   PQDPPCDVAA---AAVVVSPPDPKSHHGGGGDEDVGRPAQPPSA 44


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -2

Query: 262 PIMDMRVCLVASRRGESRXXXRPVQRPCDVAVTHVSAVASGPTRPQPHVGAGRVATPG 89
           P   +     A+++ E++        P   A    SA A  PT+P P   A R A  G
Sbjct: 18  PSQLLAAAAAAAQKAEAKKAAAAAAAPAGKAAQAASAAAKFPTKPAPPTQAAREARGG 75


>12_01_1046 -
           10756062-10756326,10757618-10757782,10757901-10758206,
           10758279-10758377,10760555-10760670,10760756-10760848,
           10760946-10761107,10761784-10762170
          Length = 530

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 99  ATRPAPTCGWGRVGPDATAETCVTAT 176
           A  P+P  GWGR    ++ E C+ A+
Sbjct: 58  AASPSPAAGWGRSDAASSLERCLAAS 83


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 184 PCDVAVTHVSAVASGPTRPQPHVGAGRVATPGXLAQCPAALPRVPKS 44
           P      H   V + P    P + A  VATP   A  P+ +PR+P +
Sbjct: 525 PSPAPSVHTPPVTAPPATAPPMI-APPVATPPDSASSPSTVPRMPSA 570


>02_04_0001 -
           18816492-18816741,18816881-18817050,18817244-18817388,
           18817495-18817565,18817910-18817993,18818103-18818222,
           18818310-18818480,18818955-18819044,18821893-18821985,
           18822073-18822405
          Length = 508

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 235 VASRRGESRXXXRPVQRPCDVAVTHVSAVASGPTRPQPHVGAGRVATP 92
           +AS  G ++    PV  P +   +  +A A+  + P P  GAG V+ P
Sbjct: 1   MASTSGPAKDQEGPVHGPQESTSSAAAAAAADASIPAPPEGAGDVSPP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,223,381
Number of Sequences: 37544
Number of extensions: 355394
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)