Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C15
(948 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 177 2e-45
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 77 4e-15
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 56 1e-08
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 42 2e-04
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 38 0.002
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.72
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 29 0.96
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 27 3.9
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 8.9
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 8.9
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 177 bits (431), Expect = 2e-45
Identities = 79/156 (50%), Positives = 110/156 (70%)
Frame = +3
Query: 234 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 413
GT+I A + GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 414 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 593
Y+L+ ++++ G P V TAA + E+CY ++ L AG++VAG+D+K G +YSIP+GG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 594 VQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKKF 701
+ +Q DANF+ NMT+EEA +F
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEF 179
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 77.0 bits (181), Expect = 4e-15
Identities = 40/155 (25%), Positives = 79/155 (50%)
Frame = +3
Query: 228 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 407
STGT+I+ +V+GAD+R T G IA++ KL I+ I+C +G+AADT+ +
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 408 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 587
+++ ++ H + P V TA + ++ + Y+ + A +++ G+D KG +++I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 588 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEA 692
G + + ++P++ + EA
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEA 186
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 55.6 bits (128), Expect = 1e-08
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Frame = +3
Query: 234 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 413
GT+ +A + G+V+ DSR + G IA++ K+ +I + +G AAD Q ++
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 414 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 590
H++ + V A+ I + Y+Y+ L G ++AG K G +Y I G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179
Query: 591 MVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEA 692
+ D+ ++ +++K+EA
Sbjct: 180 TRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEA 213
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 41.5 bits (93), Expect = 2e-04
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Frame = +3
Query: 234 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 413
G + +A DG ++ D+R+ G I R ++ ++ D + SG AD A+ +
Sbjct: 13 GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72
Query: 414 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 590
++ + ++ A + R L Y R VAG DK+ +IYS G
Sbjct: 73 QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132
Query: 591 MVQRQ 605
+R+
Sbjct: 133 SYERE 137
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 222 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 401
P TG+S++A +F GV+I AD+ + G+ ++LTK+ D G +D Q I
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 261 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 371
+ G+V+G DSR +Y+ +T+ T TDQI R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.96
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +3
Query: 234 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 413
GT+ +A + +VIG + + + K+ + + + +G AD + + D
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 414 TYHLNFHKMELGDPPLVE 467
HK+ L DP +E
Sbjct: 89 RVEAQNHKLNLADPVSIE 106
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 766 IDLTHHQKSHHEG*PMSVCP*QNFLASSLV 677
+D T H KS H G PM + P + L S ++
Sbjct: 22 VDTTAHAKSGHPGAPMGLAPAAHVLFSRIM 51
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 725 ANVSV-SVTKFFGFFLGHIGLEIGVNVAIDVGGSG 624
ANV++ S GFF G I IGV + + +GG+G
Sbjct: 97 ANVALYSTFAGLGFFAGSICNLIGVKLTLAIGGTG 131
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 530 FSCWMGQKERSSNLLHTYWWYGA 598
F+ W+G S +L H +W +GA
Sbjct: 511 FAWWIGYGPHSFHLYHWWWTWGA 533
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 453 PPLVETAAAIFRELC 497
PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,116
Number of Sequences: 5004
Number of extensions: 59687
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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