Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C15
(948 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 169 3e-42
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 91 1e-18
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 74 1e-13
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 36 0.042
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical pr... 29 6.4
AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical ... 29 6.4
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 169 bits (411), Expect = 3e-42
Identities = 76/156 (48%), Positives = 106/156 (67%)
Frame = +3
Query: 228 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 407
STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD + CRSGSAADTQAIAD
Sbjct: 21 STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80
Query: 408 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 587
I YH++ + M P + ++ IFR+ YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81 IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140
Query: 588 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAK 695
G V RQ D+ ++PN+T EE K
Sbjct: 141 GFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECK 176
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 91.1 bits (216), Expect = 1e-18
Identities = 51/157 (32%), Positives = 83/157 (52%)
Frame = +3
Query: 228 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 407
STGT+I+A F GG+V+GADSR T G IA++ +K+ K+T+ IY C +G+AAD +
Sbjct: 44 STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103
Query: 408 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 587
+++ +L ++ G V TA ++ +NY+ + A +L+ G D G +Y
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162
Query: 588 GMVQRQAXXXXXXXXXXXXXXXDANFKPNMTKEEAKK 698
G + +FK +MTK+EA+K
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEK 199
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 74.1 bits (174), Expect = 1e-13
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +3
Query: 264 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 443
GG+++ DSR ++G YI+++ K+ I D++ +G AAD Q IV + +++
Sbjct: 81 GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140
Query: 444 LGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAXXXX 620
V A+ F Y YR L G +VAG+D KKG QI+ + G +
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199
Query: 621 XXXXXXXXXXXDANFKPNMTKEEAKK 698
D ++KP MT +EA+K
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEARK 225
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 35.9 bits (79), Expect = 0.042
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Frame = +3
Query: 267 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 446
G+V+ A+ + + +T+K+ +++D I C +G AD + + + + ++
Sbjct: 42 GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101
Query: 447 GDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIG 587
G+ VE + + LC + G +L GWDK G Q+Y S P G
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSG 154
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 222 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 401
P TGTS++A ++ GVV+ D + G + + K+ D + G AD +
Sbjct: 13 PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72
Query: 402 ADIV 413
+++
Sbjct: 73 QNVI 76
>Z81508-7|CAB04149.1| 330|Caenorhabditis elegans Hypothetical
protein F20E11.12 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +3
Query: 138 VYYLLPDKMATSVINTYSDPCLP-EWMSAPH 227
+Y+LLPD+ +++ +PC+P E+++ P+
Sbjct: 155 IYFLLPDQEYGRILSKSKNPCIPNEYLNHPN 185
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Frame = +3
Query: 219 APHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQA 398
A +ST + +A + VI R +A+ VT + +I+ + CC G D +
Sbjct: 31 AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGCCAIGMIPDAKF 89
Query: 399 IADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKKGA 563
K + G E A +L Y SL +L +D +KG
Sbjct: 90 QIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGP 149
Query: 564 QIYSIPIGG 590
++Y + G
Sbjct: 150 EVYRVDPAG 158
>Z82265-5|CAB05175.1| 334|Caenorhabditis elegans Hypothetical
protein F02H6.7 protein.
Length = 334
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 474 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 587
A+ FRE Y+Y L VAGW DK +I P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286
>Z54306-6|CAA91090.2| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 713 VSVTKFFGFFLGHI-GLEIGVNVAIDVG 633
V V FGF +G + GLE+GV +DVG
Sbjct: 224 VDVNGHFGFGVGAVPGLEVGVGWGVDVG 251
>AL031268-1|CAD59161.1| 321|Caenorhabditis elegans Hypothetical
protein B0457.2 protein.
Length = 321
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 713 VSVTKFFGFFLGHI-GLEIGVNVAIDVG 633
V V FGF +G + GLE+GV +DVG
Sbjct: 224 VDVNGHFGFGVGAVPGLEVGVGWGVDVG 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,144
Number of Sequences: 27780
Number of extensions: 338293
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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