Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C11
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 33 0.071
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.66
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 29 0.88
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 1.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 1.2
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 28 1.5
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 27 2.7
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 6.2
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.2
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 26 8.2
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 8.2
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 32.7 bits (71), Expect = 0.071
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = -2
Query: 275 LSSDALFTDSPKPLSVLSRYSDSLK*SSNKYADTKFTLSLLEL*RQIVCITKEYSN*FIL 96
+SS AL + S K S+ S+ ++ L SSN+ D LS LEL + +E N F+
Sbjct: 82 VSSLALSSISGKDGSISSQNAEGLSSSSNRPLDVNDALSYLELVKYYFSERREIYNRFLE 141
Query: 95 VLKYYKT 75
+++ +K+
Sbjct: 142 IMRDFKS 148
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +1
Query: 574 LQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQEL 711
L+ + R+ IE+ +++D IQI I+++ ++F++ L +L
Sbjct: 128 LEESSSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDL 173
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.1 bits (62), Expect = 0.88
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -3
Query: 592 LLAVLVDTSICILVVVHFSLSESFSFPPIPLSIL*FAFSKPPPLFRYISDILYVQEFLY 416
L+ L + S IL ++ + E+ + P S + AF+K +FR + DI + F+Y
Sbjct: 101 LIPTLGNLSNIILSILGKPVQEASAIVTNPASEMGMAFTKVMNMFRMVKDIYTEESFIY 159
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDV---IEFDNKQVSDQIQIEIQKVKMQFQEKLQEL 711
++ +R + Q++EEL++Q+DV + D K + ++Q +I + K ++K++EL
Sbjct: 1267 QELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQNKINE-KNLAEQKVEEL 1324
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 541 NEQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPL 720
+ ++ +Y + Q Q ++EL +LDV + + + + EI +K Q +EK +
Sbjct: 277 SNKEVDYEYEIRQLQNRLDELSEELDVAQ----DLLTEKEDEIATLKRQIEEKENSSSAF 332
Query: 721 PDLLKGAQIQLQEAKQ-LQRLAEDIRDNL 804
+ + + LQE LQ ++ D +
Sbjct: 333 ENEENSSYVHLQEDYAILQAKCDEFADRI 361
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/79 (21%), Positives = 39/79 (49%)
Frame = +1
Query: 568 KYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLPDLLKGAQI 747
K+ +E E+L+ +LD + +VSD ++ E+++ + + E L + L A
Sbjct: 251 KFASKSKEYEDLQNELDATQKRLSRVSD-LEHEVKEKTLLIGKLQHEAVVLNEHLTKALC 309
Query: 748 QLQEAKQLQRLAEDIRDNL 804
L++ +++ + + NL
Sbjct: 310 MLKDGNNAEKIDKQLISNL 328
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 586 QEVEELKRQLDVIE---FDNKQVSDQIQIEIQKVKMQFQEKL-----QELAPLPDLLKGA 741
+E + +L+V E FD +S +++ K++F+ L ++++ + D+L
Sbjct: 209 KEGRTISDELEVTEGMKFDRGYISPYFITDVKSQKVEFENPLILLSEKKVSAVQDILPSL 268
Query: 742 QIQLQEAKQLQRLAEDI 792
++ Q+ + L +AED+
Sbjct: 269 ELAAQQRRPLVIIAEDV 285
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 688 IASSLFESLSEFDQKLACCQIL*HPIVFSILRLLAVLVDTSICILVVVH 542
+++ LFES S + + C L HPIV L V D +C V H
Sbjct: 195 LSAELFESASTVHRSVQCDNCLAHPIVGPRFHCL-VCEDYDLCSSCVSH 242
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 564 SVFLLLFIFLSQSHFRFLQFLFQFSDLRFQSRH--LFFGIFPIFFMSRNFFM 415
S+F L +F F FL F F FS L F S+ ++F FPI FF+
Sbjct: 111 SLFRCLLLFFFFLLF-FLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL 161
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 544 EQQQEYRLKYLQA--QQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQE 708
++++E RLK Q QQE+E KR+ + + ++ + Q E + KM +++L+E
Sbjct: 639 KKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLRE 695
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 6.2
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLD-VIEFDNKQVSDQIQIEIQKVK----MQFQEKLQE 708
E+Q ++ + Q + EEL+R+LD V+E + +V D+ E + + + EKL E
Sbjct: 703 EEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMNDEQMLALDEKLAE 762
Query: 709 L------APLPDLLKGAQIQLQEAKQLQRLAEDIRDNLXXXSXN 822
+ A + K AQ Q+ Q + D+ DN N
Sbjct: 763 VFRERKKASNKEKKKNAQETKQQIVQFKVKVIDLIDNYYKTQPN 806
>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 618 IQLSFQFFDFLLCL*ILQSVFLLLFIFLSQSHF--RFLQFLFQFSDLRFQ 475
+Q +F FF + + + L FI+L + H L F F F DL +Q
Sbjct: 77 LQSNFLFFSGITPIRAIFDFILTGFIYLKKEHIASNSLTFTFAFCDLMWQ 126
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 472 PPPLFRYISDILYVQEFL-YDIFR*VSIPNLSTSSHIFHAEFFLLQ 338
PPP ++ + D+ VQE + D++R + LS H ++F Q
Sbjct: 105 PPPSYQELEDVYIVQELMETDLYRVIRSQPLSDD----HCQYFTYQ 146
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 514 PPIPLSIL*FAFSKPPPLFRYISDILYVQEF 422
PP+P+ +L + + PPPL I + + F
Sbjct: 286 PPMPIELLSYIINMPPPLLPQEPGIKWSKSF 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,084
Number of Sequences: 5004
Number of extensions: 53192
Number of successful extensions: 239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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