Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C11
(882 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 29 0.25
M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein. 28 0.43
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 28 0.43
AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein p... 28 0.43
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta... 26 1.3
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 25 3.1
AY705398-1|AAU12507.1| 555|Anopheles gambiae nicotinic acetylch... 24 7.1
AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic acetylch... 24 7.1
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 28.7 bits (61), Expect = 0.25
Identities = 14/64 (21%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 583 QQEVEELKRQLDVIEFD---NKQVSDQIQIEIQKVKMQFQEKLQELAPLPDLLKGAQIQL 753
+QE+E+ K ++++++ + +K + DQ++ E+ K + + Q +ELA + + + ++
Sbjct: 870 RQEIEKDKEKIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRI 929
Query: 754 QEAK 765
+ K
Sbjct: 930 ESMK 933
>M93690-1|AAA29364.1| 613|Anopheles gambiae ORF1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 0.43
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLP 723
+QQQ + + Q QQ+ ++ ++Q + N+Q Q Q + Q+ + + Q++ Q +
Sbjct: 225 QQQQHQQREQQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQN 284
Query: 724 DLLKGAQIQLQEAKQLQRLAE 786
+ Q Q Q+ +Q Q+ E
Sbjct: 285 QQHQRQQQQQQQQRQQQQQQE 305
Score = 25.4 bits (53), Expect = 2.3
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLP 723
+QQQ+ + + Q QQ+ ++ + Q + +Q Q + + Q+ ++Q Q + +
Sbjct: 234 QQQQQQQQQQQQQQQQQQQQRNQQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQ 293
Query: 724 DLLKGAQIQLQEAKQL 771
+ Q Q QE ++L
Sbjct: 294 QQQQRQQQQQQEQQEL 309
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 27.9 bits (59), Expect = 0.43
Identities = 22/96 (22%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNK-----QVSDQIQIE-----IQKVKMQFQ 693
E++++ + + ++ ++ V+E K L + E + K +V+++ ++E ++ + +
Sbjct: 464 EEKEKLQTELIELKRAVDESKSALSIAESELKICQHDEVTERRKLESLRYSYEETEKDLE 523
Query: 694 EKLQELAPLPDLLKGAQIQLQEAKQ-LQRLAEDIRD 798
EK L L + L + +L+ AKQ LQ A + R+
Sbjct: 524 EKRARLQTLEEALPVTRTELETAKQKLQENANEERE 559
>AB090813-1|BAC57901.1| 724|Anopheles gambiae gag-like protein
protein.
Length = 724
Score = 27.9 bits (59), Expect = 0.43
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 547 QQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQE 708
QQQ+++ + Q QQ+ ++ +RQ + +Q Q Q + Q+ + Q Q++ Q+
Sbjct: 307 QQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQ 360
Score = 27.1 bits (57), Expect = 0.76
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKR------QLDVIEFDNKQVSDQIQIEIQKVKMQF-QEKL 702
+QQQ+ + + Q QQ+ ++ +R Q + +Q Q Q + Q+ + Q+ Q++
Sbjct: 315 QQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQ 374
Query: 703 QELAPLPDLLKGAQIQLQEAKQLQR 777
Q+ P L Q QLQ + +LQ+
Sbjct: 375 QQQQPRQSLPHRKQTQLQLSPRLQQ 399
Score = 26.6 bits (56), Expect = 1.0
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLP 723
++QQ+ + + Q QQ+ + ++Q +Q Q Q + Q+ + + Q L
Sbjct: 335 QRQQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLPHRKQTQLQLS 394
Query: 724 DLLKGAQIQLQEAKQLQR 777
L+ Q Q Q+++Q Q+
Sbjct: 395 PRLQQQQQQQQQSQQQQQ 412
Score = 25.0 bits (52), Expect = 3.1
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLP 723
++QQ+ R + Q QQ+ ++ ++ + +Q Q Q + Q+ + Q Q + Q+
Sbjct: 272 QRQQQQRPRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQR 331
Query: 724 DLLKGAQIQLQEAKQLQR 777
+ Q Q Q+ +Q Q+
Sbjct: 332 QQQQRQQQQQQQQQQRQQ 349
Score = 24.6 bits (51), Expect = 4.0
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +1
Query: 547 QQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLPD 726
QQQ+ + + + QQ+ ++ ++Q + +Q Q Q + Q + K +L P
Sbjct: 337 QQQQQQQQQQRQQQQRQQQQQQQQQHQQQQQQWQQQQQQQQQPRQSLPHRKQTQLQLSPR 396
Query: 727 LLKGAQIQLQEAKQLQRLAEDI 792
L + Q Q Q +Q Q+ + +
Sbjct: 397 LQQQQQQQQQSQQQQQQQPQQL 418
Score = 23.8 bits (49), Expect = 7.1
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQE 708
+ QQ+ + + Q QQ+ + +RQ + +Q Q Q + ++ + Q Q++ Q+
Sbjct: 310 QHQQQQQQQQQQRQQQQRQQQRQQQQRQQQQQQQQQQRQQQQRQQQQQQQQQHQQ 364
Score = 23.4 bits (48), Expect = 9.3
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 544 EQQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKLQELAPLP 723
+QQQ R + Q QQ+ ++ + + ++ Q Q + Q+ + Q Q++ ++
Sbjct: 274 QQQQRPRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQ 333
Query: 724 DLLKGAQIQLQEAKQLQR 777
+ Q Q Q+ +Q Q+
Sbjct: 334 QQRQQQQQQQQQQRQQQQ 351
>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
phosphoprotein protein.
Length = 1200
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 465 GGGFENANQRIERGIGGNENDSEREK*TTTRIQIEVSTSTARSRR 599
GGG ++ RG GG ++DSE E+ +R + + S + +R
Sbjct: 951 GGGSRKRKEKARRGSGG-DSDSEEEEGEGSRKRKKKGASGGQKKR 994
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 636 QASF*SNSDRDSKSEDAIPRETS 704
Q S+ NSDR+ ++++A +ETS
Sbjct: 988 QCSYRGNSDRELQNQEAASQETS 1010
>AY705398-1|AAU12507.1| 555|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 4 protein.
Length = 555
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 657 SDRDSKSEDAIPRETSGAGSFAGSLE 734
++R ED P SG G F GS +
Sbjct: 397 TNRAPSKEDLSPSSLSGTGPFGGSCQ 422
Score = 23.4 bits (48), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 616 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 509
P++ L +LV SIC+ VV VHF ++ P
Sbjct: 304 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHRMAP 342
>AY705397-1|AAU12506.1| 555|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 4 protein.
Length = 555
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 657 SDRDSKSEDAIPRETSGAGSFAGSLE 734
++R ED P SG G F GS +
Sbjct: 397 TNRAPSKEDLSPSSLSGTGPFGGSCQ 422
Score = 23.4 bits (48), Expect = 9.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -3
Query: 616 PIVFSILRLLAVLVDTSICILVV---VHFSLSESFSFPP 509
P++ L +LV SIC+ VV VHF ++ P
Sbjct: 304 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHRMAP 342
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,288
Number of Sequences: 2352
Number of extensions: 11216
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94680279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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