Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_C10
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 30 0.51
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 2.1
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 2.7
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 2.7
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 2.7
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 27 2.7
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 3.6
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 26 6.3
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 6.3
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 26 8.3
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 581 KHSAEDVSKVE-YQFQNLFNGNR-DLAKTIHD-FANSN-WREIFQEVAPPMGXGYR 736
K E+ +K E + L N N D+ T+ N N W++IF E APP+ G++
Sbjct: 407 KEEKEETNKTEDVSIEVLDNNNESDIGLTVKKKVENGNAWKQIFSERAPPLCEGHK 462
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 432 SPTSVTEHFRSRRVLSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFT 289
SP +V+E + VLS +R+ +T+ V K++C+ +W T
Sbjct: 1134 SPEAVSELMSTEVVLSIDRIFTQTSSLSGSAIVSFFKALCEVSWDEIT 1181
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 390 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 214
L+ N+ +T + + ++ + S+C P WT F R + V + +S I NGT F
Sbjct: 258 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 315
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 548 EGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGN 643
EGD +W + DW +D + E + FNGN
Sbjct: 77 EGD-HWLMPDWSSMPDDETITEDSEEETFNGN 107
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 390 LSYNRLKFKTTQFLRPLTVVSLKSMCKPAWTVFTRPTVIGSMVSIPRSAIPAARNGTAF 214
L+ N+ +T + + ++ + S+C P WT F R + V + +S I NGT F
Sbjct: 225 LNLNKALIYSTCTISAVLLLIVSSVCIPFWT-FERTLAKLAKVFLLQSGIVLVLNGTMF 282
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 648 SRLPLNKFWNWYSTLETSSALCFQSLTCQYLSPSTILSSTSRIIFIMMSRILI 490
S L+ +WNWY T++ CF + S + S IIF+MM+ L+
Sbjct: 116 SSCKLSMYWNWY-TIDA----CFITKHWHITSKHMFVGSIFGIIFMMMALELV 163
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 539 SPPRLELSSL*CPGF*SCT---FRCLRWVVSVVGHPTCIHQPVS 417
+PP L L S+ F C+ R + W+V V+G P I+ VS
Sbjct: 57 TPPGLYLVSVALSPFIGCSNVSLRLINWLVGVIGLPWLINDIVS 100
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 581 KHSAEDVSKVEYQFQNLFNGNRDLAKTIHDF 673
K E + K FQ LF RD+ KTI++F
Sbjct: 19 KAEIEILKKQNELFQPLFEQRRDILKTINNF 49
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 278 SSDPWFQYRDRRFPLRETVPPSALRTSRQAVSF 180
S+ P F Y+ FP PPSA +R F
Sbjct: 457 SAPPGFGYQQPSFPYSPGFPPSAYNQNRTGYGF 489
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 530 VEERIVEGDRYWHVSDWKHSAEDVSKVEYQFQNLFNGNRDLAKTIHDFANSN 685
VEE + D YW DW+ E + +F+ + +I D N N
Sbjct: 28 VEEHLRLNDCYWDTHDWRKCTEQME----EFRKCWEKRHGPLPSISDKKNKN 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,014
Number of Sequences: 5004
Number of extensions: 64880
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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